BAC Information

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BAC

Clone NameMSMg01-116O12
Chromosome19 (Build37)
Map Location 43,162,347 - 43,162,878
singlet/doubletsinglet
Overlap geneLOC545291
Upstream genePi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1
Downstream geneEG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116O12.T7 (MSMg01no116_o12.b1)MSMg01-116O12.TJ (MSMg01no116_o12.g1)
ACCAG328172AG328173
length707705
length of high quality
(start - end)
549 (54 - 602)537 (79 - 615)
definitionCHROMAT_FILE: MSMg01no116_o12.b1 PHD_FILE: MSMg01no116_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:17 2005CHROMAT_FILE: MSMg01no116_o12.g1 PHD_FILE: MSMg01no116_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
AATCCGCGGAATTCAGTTTTCTTTCCTTGAGAATTTTTACATCTATGTTC
ATAAGGGATATTGGTCTTTGATTTTCTTTTTGTTGATAGGCTTTTGTGTG
GTTTTGGTATCATGCTAATATTGGCACTGTAAAAAGAGTTAGGGAATATT
TCTCCAGTTTCTATTTGTGGAATAATTTGAAGAGTATTGGCATTACTTCT
TCTTTAAGATCTGGAAGTAGAATTATTATTGAATACATCTGGCCATGAGT
TTATTTTGGTTGGAAGACTTTACCTCTATTTCTCTAGGGATTATGAGTCT
GTTTAAATTGTTTATTGTTAACTTTGGCAGAACAAACATATCAAGAAATC
TATTTCTCTTATGCTTCCCATATTTTAAAGTATGTCCTTTTGATTTTGAA
TTATCTTGGTATCTGTTGGTCTTAGTTAGAGTTTTATTGCTGTGAAGAGA
CATCAAGACCAAGGAAACTGTTATAAAGAACAACATTTAATTGGGGCTGG
CTTAGAGCTTTAGAGGTTCAGTCCATTATCATCGGGGCATGAAGCATGGC
AGTGTGCAGGCAGACACAATGCTGAAGAAGGAGTGGAGAGTCCTACATCT
TGATCCAACCATAGCCAGAAGGATACTGCCTCTTCTGCACTGGGTGGAGC
TTGAGCA
CCCCNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCGAAATCTATATTTTTCTGAAGAAACAT
AGCAGTTTCATTTTAATGCAGAATGTTGTACCAAGAAGAGACACTGAAAT
CATCAAATGTTCCAGTCACTTTCAGAATGCGTTGGGTGAGGGACAGCGCT
AAAGAGCCTTGAGGAAAGGGTCATGGAGAAATCCCATTGCTTGGACTATA
TGGAGTTGTCTAGGCCCCAGATACCTCTGCAGATGTCTGGTTACATAGTA
TTTCATGTCTTGAAGTCAATGCATCTAATTCCTGCTACTAACATTTGAAA
TGTTTAAGTTAGTGACTTTAAAAACTGTATTCATTACTGTATATAAAGCT
CTATATTATGACATGGAGATGAGTCAAAGTTGAATGAATCTCAGTTTCTG
TTCAGCAGACAATTACACTCAGCCATCTATTATCCATGGGTTCTGCATCC
ATAAATTCAACCAACCACAGATAAGAAATATTTAGCATAAATTGCATCTT
CCCTGAGTACCTATACTGATTTACTTGAAATTTTTCCTTAAATAATATTG
CACAACAGCTGATTATATAAAACATACTTTGAATCATACATCATAAGTTA
TTTAGAGGTGATTTCAAATATATGGTAATTGTGTATAAGTTATATACCAA
TACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_o12.g1 MSMg01no116_o12.g1 CHROMAT_FILE:
MSMg01no116_o12.g1 PHD_FILE: MSMg01no116_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:17 2005
         (537 letters)



>mm_chr19_43162292_43163228
          Length = 937

 Score =  913 bits (472), Expect = 0.0
 Identities = 518/534 (97%), Gaps = 2/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   tatttttctgaagaaacatagcagtttcattttaatgcagaatgttgtaccaagaagaga 63
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 587 tatttttctgaagaaacatagcagtttcattttagtgcagaatgttgtaacaagaagaga 528

                                                                       
Query: 64  cactgaaatcatcaaatgttccagtcactttcagaatgcgttgggtgagggacagcgcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cactgaaatcatcaaatgttccagtcactttcagaatgcgttgggtgagggacagcgcta 468

                                                                       
Query: 124 aagagccttgaggaaagggtcatggagaaatcccattgcttggactatatggagttgtct 183
           ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 467 aagagccttgaagaaaaggtcatggagaaatctcattgcttggactatatggagttgtct 408

                                                                       
Query: 184 aggccccagatacctctgcagatgtctggttacatagtatttcatgtcttgaagtcaatg 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aggccccagatacccctgcagatgtctggttacatagtatttcatgtcttgaagtcaatg 348

                                                                       
Query: 244 catctaattcctgctactaacatttgaaatgtttaagttagtgactttaaaaactgtatt 303
           ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 347 catctaattcctgctactaacatttgaaatggttaagttagtgactttaaaagctgtatt 288

                                                                       
Query: 304 cattactgtatataaagctctatattatgacatggagatgagtcaaagttgaatgaatct 363
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cattactgtatatatagccctatattatgacatggagatgagtcaaagttgaatgaatct 228

                                                                       
Query: 364 cagtttctgttcagcagacaattacactcagccatctattatccatgggttctgcatcca 423
           |||||||||||||||||||||||||| | |  ||||| ||||||||||||||||||||||
Sbjct: 227 cagtttctgttcagcagacaattacaatta--catctgttatccatgggttctgcatcca 170

                                                                       
Query: 424 taaattcaaccaaccacagataagaaatatttagcataaattgcatcttccctgagtacc 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 169 taaattcaaccaaccacagataagaaatatttagcataagttgcatcttccctgagtacc 110

                                                                 
Query: 484 tatactgatttacttgaaatttttccttaaataatattgcacaacagctgatta 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tatactgatttacttgaaatttttccttaaataatattgcacaacagctgatta 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)