CACCCCAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCCTATAACTGCCAAACAAGGTTGAGGGGTCAAGGA
CCAAGGGCAAGGGCAAGGACAAGGACAAGAGTGAGCTGAGAGGACAAAAC
CCAGGGATGATATCATAGTTCTGAAAAAGTAGGAAACCCCAAAGAACTAA
ATGCATGTAGTGTCATCCAAACCCAACAGCCAGAGATGGACTAGCATGAG
CCAGAAAGAACAGGTTGGCATCTGACAGCAGCCTTCACTCTCACCTTCCA
GACAAACCCACTTAAAAGACATTACAGGTAAGCTCCCTGCCACGGTTTGG
ATCTGAAATGTACCAGAAAGGCATATGAGATAATGGCTTGATCCTCGGGG
ACATCTTATTGGGATCCTTTAAAAGGTTGAGTCTCATGAGAGCTTCAAAT
CACAGGGCATCTCCATGAAGGGGACTGTGGGACTCTGGACTTGACATTTT
ATTTTCCTTTCTTTATGTCTTGGCCACGAGGAGAGTGGCTTTGCTCTGCC
ACTCACTCCCAAGTGTGATATTTCTGTCTTACCACAGGCCCCAAAGCACC
AGGGCTGGGCAATCACAATTGAAACACTCAGAGAAAAACTGTCTTTAGCA
GGTGAACTTAACTCATTTTTTTACTGATCAAAAGTTGACTTATATTTCCT
GAAGAATCTT

TAAAAAGTATAAAACTGGAGCCCGCCTTCCCAAACAACTTCCGTGAACTA
TATATTTCACCCCGCAATTCTTACCAACTCCGAGCGACTCTAACGTGGCT
GTTCTCATAACCACATTTTGAGAAACAGACCTCTGAATTGACACTATTGG
CAGCTTCCTTCCTTTAAATACTTCCCTTTGGTTGTTATGATATCTCTCCC
CCTCCTCAAGTTCTGTGGGCTAATTCTGCTCTCCATATATAAAATCTTAT
TCTGCCAGAACCACCTGCCCCTATACTCTCTGCACCTCCCTCTGCAGTCA
GATTATTAGCCCAAAGCCCCCCTACTCGTCCACACGCCCACCCCACCCCT
CCACCCACCGAGCCCCCCACTCACTGCTGAAATCCAATGGATTTTGTCAA
ATTACCTCCTCTTCAATCACCCACTGACCCACTACATCTAATATCGCCGC
ACGCCCGACCAAAATCACACAACATTTCTATCTACCACAACCCGCATCTG
TACACTTTCTCTCCCCCCTTAACACCCCCTGCTTTATCCCCTCACCTCAC
CTCCATACTCCCAAACCATATACACCCCAACCCTTTACCCACACCCTAAA
AATATAGGCGCCATTCCCCTCCCACGCATTCTCCCCTCTGTAACTCTTCT
TCTCCCCACCTTCCATCCCCCCCAACAATTAGTCAAGCCCACAGACCACT
CCCCCCCCCCCCCCGCTCTTCATTCCCCACACGCCCACCTTATATATGTA
CTCAAG

Query= MSMg01no116_o24.b1 MSMg01no116_o24.b1 CHROMAT_FILE:
MSMg01no116_o24.b1 PHD_FILE: MSMg01no116_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:20 2005
         (651 letters)



>mm_chr19_38152884_38153934
          Length = 1051

 Score = 1125 bits (582), Expect = 0.0
 Identities = 632/650 (97%), Gaps = 6/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctataac--tgccaaacaaggttgaggggtcaaggaccaagggcaagggcaa 62
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctataacgat--caaacaaggttgaggggtcaaggaccaagggcaagggcaa 262

                                                                       
Query: 63  ggacaaggacaagagtgagctgagaggacaaaacccagggatgatatcatagttctgaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 ggacaaggacaagagtgagctgagaggacaaaacccagggatgatatcatagtcctgaaa 322

                                                                       
Query: 123 aagtaggaaaccccaaagaactaaatgcatgtagtgtcatccaaacccaacagccagaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagtaggaaaccccaaagaactaaatgcatgtagtgtcatccaaacccaacagccagaga 382

                                                                       
Query: 183 tggactagcatgagccagaaagaacaggttggcatctgacagcagccttcactctcacct 242
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 tggactagcatgagccagaaggaacaggttggcgtctgacagcagccttcactctcacct 442

                                                                       
Query: 243 tccagacaaacccacttaaaagacattacaggtaagctccctgccacggtttggatctga 302
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 443 tccagacaaacccacttaaaagacattacaggtaagctccctgccatggtttggatctga 502

                                                                       
Query: 303 aatgtaccagaaaggcatatgagataatggcttgatcctcggggacatcttattgggatc 362
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 503 aatgtaccagataggcatatgagataatggcttgatcgtcggggacatcttattgggatc 562

                                                                       
Query: 363 ctttaaaaggttgagtctc-atgagagcttcaaatcacagggcatctccatgaaggggac 421
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttaaaaggttgagtctcga-gagagcttcaaatcacagggcatctccatgaaggggac 621

                                                                       
Query: 422 tgtgggactctggacttgacattttattttcctttctttatgtcttggccacgaggagag 481
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catgggactctggacttgatattttattttcctttctttatgtcttggccacgaggagag 681

                                                                       
Query: 482 tggctttgctctgccactcactcccaagtgtgatatttctgtcttaccacaggccccaaa 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tggctttgctctgccactcactcccaagtgtgatatttctgtcttaccacaggccccaaa 741

                                                                       
Query: 542 gcaccagggctgggcaatcacaattgaaacactcagagaaaaactgtctttagcaggtga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 742 gcaccagggctgggcaatcacaattgaaacactcagagaaaaactgtctttagaaggtga 801

                                                             
Query: 602 acttaactcatttttttactgatcaaaagttgacttatatttcctgaaga 651
           || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 802 acctaactcatttttctactgatcaaaagttgacttatatttcctgaaga 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)