BAC Information

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BAC

Clone NameMSMg01-117E10
Chromosome19 (Build37)
Map Location 11,003,346 - 11,003,896
singlet/doubletsinglet
Overlap genenone
Upstream geneFth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1
Downstream geneGpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117E10.T7 (MSMg01no117_e10.b1)MSMg01-117E10.TJ (MSMg01no117_e10.g1)
ACCAG328450AG328451
length752716
length of high quality
(start - end)
367 (70 - 436)553 (72 - 624)
definitionCHROMAT_FILE: MSMg01no117_e10.b1 PHD_FILE: MSMg01no117_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:46 2005CHROMAT_FILE: MSMg01no117_e10.g1 PHD_FILE: MSMg01no117_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCATTGTGTTTCCATTGAGAAGCAGAGCAAAGGGGTCCAGTGACTT
GGCCCCACCTGGGCTTATCACTCAGTTTCTAACATGGAGTTTAAATAAAG
AGGTATGCAAAGCGAAGAATTTCTTTTTTTTTTTAATTTTTATTTTATTT
TATTTTAATTAGGTATTTTCTTCATTTACACTTCCAATGCTATTCCAAAA
GTCCCCCATACCCTCCCCCCCACACTCCCCTACCCACCCACTCCCTCTTC
TTGGCCCTGGCGTTCCCCCGCACTGAGGTATATGAAGTTTGCAAGACCAA
TGTGCCTCTCTTTCTACTGATGGCCATCTAGGCCATCTTCTGATGCATAT
GCAGCTAGAGACATGAGCTCCGGGGGGGGGGGGGGTTACTGGTTAGTTTT
TATTGCTGTTCTATTTTTGGGTTGGCTTTGTCTCTTTCATTTTTCTGTTT
TTCTTTATCATATACTTTATTGTTTCATGCTGTTTTCTCTCTTCTCACTT
TGTTTGGTTTTTTTTCTTCTTGTGTGTTTTGTTTTATTTTGTTTCTTTCT
TCTTTTCTTTACTTTTTTATTCTTTGTCTTCTTTGTTCTCTTTTGCTATG
TTCGTTTTTTAATTTGTTTTGTTTTCTTTTCTGTTCTCTTGTTTCTTTTT
CTGTTTCCTTTCTTCTTTGCTTTTCTCTTATTAATTCTTCTTCTGCTTTT
TG
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGAGCTCAAAGTCCAGACCCAGGAATG
TACTTCATTCTTTTTTTCTTTTTTAATTATATGCATAGGTATGTGCTTGT
GTCTGAATTTGTGAAGGTGAGTGCAGTGTATGCAGACCCAACAGAGGGTG
TCAGATCCCAGAAGGTGGAGTTACAGGTGGCAGTAAGGCACCTGACATGA
ATGCTGAGTCTCAAGCTAGTGTCTTCTCAAAAATCAATGCTTGTTCTAAC
CACTGAGCCATCTCTCACTTTCCTAATCTGCAAAGTGAGACTACGAATAA
GGCAGGCTAAGAGGATGCCTATAGCCCCAGCATTTGTGAAGTGGAGGGGG
GAGGAGCAGAAGCTCAGGGACACCCTTGGCTAACAGAGTCAGTTTGAGGC
CAACCTGGGGTACATGAGATCCTGTCTCAACATAACAAATTAACACAGCT
GGGATGCAGTGAGATTAGAGCATCACTTATCCATGCCCTTCATCTTCTCT
GCTAACTCAGTGTATTCTAGGGGCAAAAGGAGGATGGGACATGTCTGGGT
GGCTGAATGTCTGGATGAATGCCATTCTATGGCAGCATGTGGCTCTGCTG
ACCACTTGACTTCATACTTCTCTGGCTTTCCGATTACTTGAGAATAAATA
ACATCTATTGGTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_e10.g1 MSMg01no117_e10.g1 CHROMAT_FILE:
MSMg01no117_e10.g1 PHD_FILE: MSMg01no117_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:46 2005
         (553 letters)



>mm_chr19_11003144_11004096
          Length = 953

 Score = 1031 bits (533), Expect = 0.0
 Identities = 548/553 (99%), Gaps = 2/553 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagctcaaagtccagacccaggaatgtacttcattctttttttcttttttaattata 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 203 aaggagctcaaagtccagacccaggaatgtacttcattc-ttttttcttttttaattatg 261

                                                                       
Query: 61  tgcataggtatgtgcttgtgtctgaatttgtgaaggtgagtgcagtgtatgcagacccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgcataggtatgtgcttgtgtctgaatttgtgaaggtgagtgcagtgtatgcagacccaa 321

                                                                       
Query: 121 cagagggtgtcagatcccagaaggtggagttacaggtggcagtaaggcacctgacatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagagggtgtcagatcccagaaggtggagttacaggtggcagtaaggcacctgacatgaa 381

                                                                       
Query: 181 tgctgagtctcaagctagtgtcttctcaaaaatcaatgcttgttctaaccactgagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgctgagtctcaagctagtgtcttctcaaaaatcaatgcttgttctaaccactgagccat 441

                                                                       
Query: 241 ctctcactttcctaatctgcaaagtgagactacgaataaggcaggctaagaggatgccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctctcactttcctaatctgcaaagtgagactacgaataaggcaggctaagaggatgccta 501

                                                                       
Query: 301 tagccccagcatttgtgaagtggaggggggaggagcagaagctcagggacacccttggct 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 502 tagccccagcatttgtgaagtggaggggggaggagcagaagctcagggtcacccttggct 561

                                                                       
Query: 361 aacagagtcagtttgaggccaacctggggtacatgagatcctgtctcaacataacaaatt 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 a-cagagtcagtttgaggccaacctggggtacatgagatcctgtctcaacataacaaatt 620

                                                                       
Query: 421 aacacagctgggatgcagtgagattagagcatcacttatccatgcccttcatcttctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacacagctgggatgcagtgagattagagcatcacttatccatgcccttcatcttctctg 680

                                                                       
Query: 481 ctaactcagtgtattctaggggcaaaaggaggatgggacatgtctgggtggctgaatgtc 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ctaactcagtgtattctaggggcaaaaggaggatgggacacgtctgggtggctgaatgtc 740

                        
Query: 541 tggatgaatgcca 553
           |||||||||||||
Sbjct: 741 tggatgaatgcca 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)