BAC Information

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BAC

Clone NameMSMg01-117E15
Chromosome19 (Build37)
Map Location 60,879,333 - 60,879,722
singlet/doubletsinglet
Overlap genenone
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10
Downstream gene1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117E15.T7 (MSMg01no117_e15.b1)MSMg01-117E15.TJ (MSMg01no117_e15.g1)
ACCAG328459AG328460
length709712
length of high quality
(start - end)
392 (47 - 438)248 (74 - 321)
definitionCHROMAT_FILE: MSMg01no117_e15.b1 PHD_FILE: MSMg01no117_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:47 2005CHROMAT_FILE: MSMg01no117_e15.g1 PHD_FILE: MSMg01no117_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCATAATTTGCGGCGCTAAACGACTCCTATTTCGAGAGGATGCGCGG
AATTCCATCATATCCAATATATTATTTACTTTTGCATGGATGTGATCAAA
ACATCTAAAATATTACAGGGAGGGGTAATTTATTTCATGTCATAGTTTCA
GAGGTATCAGTGTACCATGGAGGCATAGTTGAGCAGAACATCTCATATCA
TGGATACTAGAAAACAGCAGTTCCCAAGGACATGTCCCTAATGGGATGCT
TCCTCCTCAATCCATGCATTGTTCCCTGCCTTTCACTACCTCACAGTAAT
GCCATTATATTATTGATCCTTATGTCGATAATCCAGGTATTGGTCAGAAT
TCACAGGAACTAATATCCCTGGAAATACTATCATAACACCTATACCCCGA
GAGATGTGCTTTATAATCTCCTAGGCATTTCTCAATCCAGCCTAGTTGAC
AGTTGAGATTAACTATCACAGTGACGTTTTCTATGAGGAAGACCTTGCTA
CTGCCTCCATAAGTCCAGTTGGCAAATCATATGTACAAATATTTATATGC
GTCTTATGATGCCATTTTCATTTAAATTAGTCGAGATTCTTATTTACTTC
CTTCAAACAACGCCTTTATCTTTATCATTTATAGCAATTTTATGTCAACA
ATTGTCCATTCTGGTTTTATAGGTATGCCCGCTAGTGTTTTTTTTGATCA
TTTTCCACA
NCCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAA
CCCTGTCTCAAAAAAACAAACAAAAAACAAAAACAACAACAACAACAAAA
GATACAAAGAACACAATCCTCAGTTGTATTCATCTTGAGCTTACCTCCTA
GTCCTAGCTCAATGTCAAATTCCTGCCTGAGCTTGCTTCTGTGTCCTAGC
CCAATGGCATACTCTTGCCAAATGTCTAGAATCAGCCCCAAGAGCTCTCC
ACAAGGTCTGCTTTTGTGCTTATAAGGTAGAATCTTTGTCACGATAGCCT
TGTGGTATAGTTTGAAGTTGTATAATTTAATGCCTCTGTGATGTGAGTTT
TGTTGCTGTTAGACTTGCTTTGACTATTCATGGTCTTTTGTATCTTCACA
CAAATTTTATGATTGTTTTCTCTATCTAGTTCTGTGAAAAATGTCATTGC
AATTTTGAAGGAAATTTCATTAACAGTGTAGATTGCTTATTGGTAGTATA
CCATCTCTTAAATAATAAATCTCAAGGCTCAACAATAATACTCTTCCCCT
CTTCTAGAACAAATACTCATAGTTCTACCTCAAGTGTGCATTGCAGATAC
TTGTCATGATAGAACTAATTTAGGGTACAACATAAAATATAAACATTATT
TTTACAAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_e15.b1 MSMg01no117_e15.b1 CHROMAT_FILE:
MSMg01no117_e15.b1 PHD_FILE: MSMg01no117_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:47 2005
         (392 letters)



>mm_chr19_60879130_60879922
          Length = 793

 Score =  731 bits (378), Expect = 0.0
 Identities = 387/390 (99%), Gaps = 1/390 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccatcatatc-caatatattatttacttttgcatggatgtgatcaaaacatctaa 62
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaattccatcatatctaaatatattatttacttttgcatggatgtgatcaaaacatctaa 534

                                                                       
Query: 63  aatattacagggaggggtaatttatttcatgtcatagtttcagaggtatcagtgtaccat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aatattacagggaggggtaatttatttcatgtcatagtttcagaggtatcagtgtaccat 474

                                                                       
Query: 123 ggaggcatagttgagcagaacatctcatatcatggatactagaaaacagcagttcccaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ggaggcatagttgagcagaacatctcatatcatggatactagaaaacagcagttcccaag 414

                                                                       
Query: 183 gacatgtccctaatgggatgcttcctcctcaatccatgcattgttccctgcctttcacta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gacatgtccctaatgggatgcttcctcctcaatccatgcattgttccctgcctttcacta 354

                                                                       
Query: 243 cctcacagtaatgccattatattattgatccttatgtcgataatccaggtattggtcaga 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 353 cctcacagtaatgccattatattattgatccttaagtcgataatccaggtattggtcaga 294

                                                                       
Query: 303 attcacaggaactaatatccctggaaatactatcataacacctataccccgagagatgtg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 attcacaggaactaatatccctggaaatactatcataacacctataccccgagagatgtg 234

                                         
Query: 363 ctttataatctcctaggcatttctcaatcc 392
           ||||||||||||||||||||||||||||||
Sbjct: 233 ctttataatctcctaggcatttctcaatcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 793
Length adjustment: 9
Effective length of query: 383
Effective length of database: 784
Effective search space:   300272
Effective search space used:   300272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)