Query= MSMg01no117_g10.b1 MSMg01no117_g10.b1 CHROMAT_FILE:
MSMg01no117_g10.b1 PHD_FILE: MSMg01no117_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:57 2005
(368 letters)
>mm_chr19_41748729_41749495
Length = 767
Score = 646 bits (334), Expect = 0.0
Identities = 352/358 (98%), Gaps = 1/358 (0%)
Strand = Plus / Minus
Query: 1 ggacccccgtttcagctgtccagtaaatgctgacatactggcctgctttctctccctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggacccccgtttcagctgtccagtaaatgctgacatactggcctgctttctctccctttg 498
Query: 61 agtgacagtggttgggcagaggggaggagcttgcgcacaggatgttatctgagtctctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agtgacagtggttgggcagaggggaggagcttgcgcacaggatgttatctgagtctctta 438
Query: 121 cagtgtgtccccagtcctaatgttctcttaactaaatcctgactggtctacctcccactg 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 437 cagtgtgtccccagtcctaatgttctcttaactaaatcctgactgggctacctctcactg 378
Query: 181 tgatcagacagggggagagccactagctgtgactcagcaccccagaaatgcaaactcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgatcagacagggggagagccactagctgtgactcagcaccccagaaatgcaaactcagc 318
Query: 241 ccatcccaaggttcggtgcttcctggcactgagacaatgacatcactgttcactgtcagc 300
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 317 ccatcccaagg-ccggtgcttcctggtactgagacaatgacatcactgttcactgtcagc 259
Query: 301 ccagacatcagttctgttactgttagaatctgagaacgggagtgtggtggctcccaag 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 258 ccagacatcagttctgttactgttagaatctgagaatgggagtgtggtggctcccaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space: 272122
Effective search space used: 272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_g10.g1 MSMg01no117_g10.g1 CHROMAT_FILE:
MSMg01no117_g10.g1 PHD_FILE: MSMg01no117_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:57 2005
(561 letters)
>mm_chr19_41598890_41599851
Length = 962
Score = 1064 bits (550), Expect = 0.0
Identities = 559/562 (99%), Gaps = 1/562 (0%)
Strand = Plus / Plus
Query: 1 ctttctgg-aaataagaggatttggagttggagactgttttgagatttacttaaaggaac 59
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctggaaaataagaggaattggagttggagactgttttgagatttacttaaaggaac 260
Query: 60 agaggttaactgttactgagactctatagtctccagggtcaaaaatagatagtatttggc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggttaactgttactgagactctatagtctccagggtcaaaaatagatagtatttggc 320
Query: 120 cattaatcccgatgattgcaccaccaccgctgcctctctacctctacagctcctaactca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaatcccgatgattgcaccaccaccgctgcctctctacctctacagctcctaactca 380
Query: 180 cgcctttcttcttttctaatgtttgaaagagcaagaggacacagtaactaattacattag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgcctttcttcttttctaatgtttgaaagagcaagaggacacagtaactaattacattag 440
Query: 240 gtaaataactatcagctgtttgattagtgggtaatttaattttgttaatacctttagaat 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaataacaatcagctgtttgattagtgggtaatttaattttgttaatacctttagaat 500
Query: 300 aatttgatgtcaagaaataaaattgaaaaataattgctttctaatgataaatcaaaaagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttgatgtcaagaaataaaattgaaaaataattgctttctaatgataaatcaaaaagt 560
Query: 360 tacagtttaaaaataatataaaaattaactctaattacaatacgaacttcagtagctact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacagtttaaaaataatataaaaattaactctaattacaatacgaacttcagtagctact 620
Query: 420 gtattgcagattagaggtttataggaagtagagcaaagacattttaattacaatattatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtattgcagattagaggtttataggaagtagagcaaagacattttaattacaatattatt 680
Query: 480 tttattatcagtttagcaagatagtactgtttctgaagtctgccttttaattttaatttt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttattatcagtttagcaagatagtactgtttctgaagtctgccttttaattttaatttt 740
Query: 540 aattgtatgtgtaatttgccta 561
||||||||||||||||||||||
Sbjct: 741 aattgtatgtgtaatttgccta 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
