Query= MSMg01no118_a22.b1 MSMg01no118_a22.b1 CHROMAT_FILE:
MSMg01no118_a22.b1 PHD_FILE: MSMg01no118_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:47 2005
(622 letters)
>mm_chr19_60208760_60209782
Length = 1023
Score = 1160 bits (600), Expect = 0.0
Identities = 615/620 (99%), Gaps = 3/620 (0%)
Strand = Plus / Plus
Query: 5 gaattcttattta-ggttctactgaaaaaataattgaagtcagactggaaacgaagacat 63
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatttagggtaatactgaaaaaataattgaagtcagactggaaacgaagacat 264
Query: 64 aaagccatccttgtttgtggaggattgaggtgccaacaatttaaaataaaaatttctaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagccatccttgtttgtggaggattgaggtgccaacaatttaaaataaaaatttctaca 324
Query: 124 accggtaactggccagggcttcaggatatgggatgaatgagaaaacaaaatattatatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accggtaactggccagggcttcaggatatgggatgaatgagaaaacaaaatattatatta 384
Query: 184 gcaacaaacacacgaacacaacttaaaattaaaatgtatctattgatttgttgatatcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaacaaacacacgaacacaacttaaaattaaaatgtatctattgatttgttgatatcca 444
Query: 244 cctcaaaacaaatgaaaacatgtgattacaaatccagcaaagcacacaggggacttctat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcaaaacaaatgaaaacatgtgattacaaatccagcaaagcacacaggggacttctat 504
Query: 304 gttgaagacaacacataaaaattaagaaatacagaggagcaggtacactctacacatggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttgaagacaacacataaaaattaagaaatacagaggagcaggtacactctacacatggt 564
Query: 364 gtggaagactcgtcgtacaaaatggcagctctacagataaactgggttggaatccagaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtggaagactcgtcgtacaaaatggcagctctacagataaactgggttggaatccagaag 624
Query: 424 agaaaagggttttctgtggggagaaagatcacaaaatgcaaacatctagggtttagttag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaaagggttttctgtggggagaaagatcacaaaatgcaaacatctagggtttagttag 684
Query: 484 cagtcaatagatgcctatccatgctggtttctaaatgtgaagaaatgcaccagggtcatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagtcaatagatgcctatccatgctggtttctaaatgtgaagaaatgcaccagggtcatg 744
Query: 544 caggaatgtgatgg-atagggcagcgggcaaggtgtatgtggaaactctcacagacactg 602
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caggaatgtgatggca-agggcagcgggcaaggtgtatgtggaaactctcacagacactg 803
Query: 603 tctgtattttctattcctct 622
||||||||||||||||||||
Sbjct: 804 tctgtattttctattcctct 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1023
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1013
Effective search space: 619956
Effective search space used: 619956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_a22.g1 MSMg01no118_a22.g1 CHROMAT_FILE:
MSMg01no118_a22.g1 PHD_FILE: MSMg01no118_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:47 2005
(501 letters)
>mm_chr19_60367373_60368274
Length = 902
Score = 940 bits (486), Expect = 0.0
Identities = 497/502 (99%), Gaps = 4/502 (0%)
Strand = Plus / Minus
Query: 1 tgaaatagagatgc-acagtcagtgagggttgttgtactgcagcacaagtgggtaagagg 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgaaatagagatgcaacagtcagtgagggttgttgtactgcagcacaagtgggtaagagg 532
Query: 60 aggaaaggaaacacatttatttcttatcaggagcctgtgataacaaatctactccctgat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aggaaaggaaacacatttatttcttatcaggagcctgtgataacaaatctactccctgat 472
Query: 120 aacagcattagtctattcttgaaggcagatctttcatgatctaatcaacttgtagaggtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aacagcattagtctattcttgaaggcagatctttcatgatctaatcaacttgtagaggtt 412
Query: 180 cttgccctcaacactgctgcatgcagaaataacatatgaactctggataacatattctaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cttgccctcaacactgctgcatgcagaaataacatatgaactctggataacatattctaa 352
Query: 240 ctttaacagtagtgggaagatcttcagattttatataagatcggagatgggggaatttct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctttaacagtagtgggaagatcttcagattttatataagatcggagatgggggaatttct 292
Query: 300 gagctcattttgtttaaacatcttagttgcttgtatcctcccaccccaccccatgcatct 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 291 gagctcattttgtttaaacatcttagttgcttgtatcctcccacctcaccccatgcatct 232
Query: 360 caggataaccttgaactttttttttttttttttttggtttttcaagacagggtttctctg 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 caggataaccttgaac---ttttttttttttttttggtttttcaagacagggtttctctg 175
Query: 420 tatagccctggctgtcctggaccacactttgtagaccaggctggccttggactcagaaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tatagccctggctgtcctggaccacactttgtagaccaggctggccttggactcagaaat 115
Query: 480 ctgcctgcctctgcctcctgag 501
||||||||||||||||||||||
Sbjct: 114 ctgcctgcctctgcctcctgag 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
