BAC Information

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BAC

Clone NameMSMg01-118F03
Chromosome19 (Build37)
Map Location 13,808,755 - 13,901,126
singlet/doubletdoublet
Overlap geneOlfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499
Upstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1
Downstream geneOlfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F03.T7 (MSMg01no118_f03.b1)MSMg01-118F03.TJ (MSMg01no118_f03.g1)
ACCAG329224AG329225
length711694
length of high quality
(start - end)		482 (93 - 574)552 (80 - 631)
definitionCHROMAT_FILE: MSMg01no118_f03.b1 PHD_FILE: MSMg01no118_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:08 2005CHROMAT_FILE: MSMg01no118_f03.g1 PHD_FILE: MSMg01no118_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,808,755 - 13,809,235)(13,900,611 - 13,901,126)
sequence
NNNGGGATAGTAGGNNAATGTCTATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCAAAGAGGATCCGCGGAATTCTTTAGTTTCCAGAAAATGTTATATT
ACCACCTTAACTGAAAGAAAATATTGTGCACAAACTTGCTATCTAAAGGA
TTTTTTCCCCTATATTGTGACGAGAACCCCAAGAGATGCCCATAAAATTC
ATTGGCTATCAGAGTATCAGGTTTTAAAACCACTAATTTGGGAGGTTGTT
TAACAGATTTTGTTTTTACAATATAAGAAGTATTTTAGTTAAATGTTGTT
TTTTAGCAAGGGAATGGATTGTAAAGCACAGATTTGTATTTATAGTGTTG
AGTTGGAATAAAAACTGTACTTTGGTATTACCTTAGTATCTTAAATAAAA
ATGAGGTAATAATAAAGAAAAAGGTATTTTTGTTTATTTGTTTGTTTGAT
TGTTTTTGTTTTGTAGAGATGTAAAAATCACAGCAGAATTTTGAATAAAG
AGATAGGACTAGCAGATTTGCATTTTTAATAACTCTTCTTACACCAGAAA
AACCCATTGGAGAGAAATGATTTATTCAGACTTCCTATTGTTGTACTATC
AGCCAACAATCTTGTACTGGTGCATTTGACAGATTGAACATTAGGGATAA
TTATGGACTTGACATGGGATCCATTTGGACCAAAATGTTTTTGGTCTATA
TAAGTGAATTA

NNTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTCTTCCTTTCCTTACCT
TATGATTACTGTGACTAAAGTTCCCTGCTACTTGCTAGGTTTATGCAATT
ATCAGTATCAAACCTGATAGGACTTAGCACTTGCTAGGAAGACAGTATCC
TTACCAAATGAGTTATTTCCTAGCCTTACATGACATTTTAAAAATATTTT
ACTTATTTATTTATTATGTATTGGTATCTATGTGTGTGCATGCACATAGG
TGTGCCCGTGTGTGCATATGTGTGTATGTGTGTGTGTGTAAGTCAAAAAG
GGCTATCAGGTGACCTCCTCTATCACTCTCTTCCTATTTGTTTGAGATGG
AATCTTTCATTGAACCCAAGTTTGCTGTTTCTGGGTTAGACTGGAAGCCA
GGAAACCCCAGTGACTTTCTTTTCTTTTATCCTTGAAGGTGGGACTGCAG
CACCTATGGAACTCCAGGCTTGCTATATGGGTGACAATGCCAAATGATTT
TTATGATTGTGCCAAAAAGAATCCTCAACACTGAACCATCTCTCCATCAT
CACAATTTATTTTTAATTATTTAATTATTTTTAGTTACTAAATTATGATA
GTTTAATAGCCTAATTAATGAAGCTGAACTACTCAAACTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f03.b1 MSMg01no118_f03.b1 CHROMAT_FILE:
MSMg01no118_f03.b1 PHD_FILE: MSMg01no118_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:08 2005
         (482 letters)



>mm_chr19_13808554_13809435
          Length = 882

 Score =  876 bits (453), Expect = 0.0
 Identities = 474/481 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttatattaccaccttaactgaaagaaaatattgtgcacaaacttgctatctaaaggattt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttatattaccaccttaactgaaagaaaatattgtgcacaaacttgctatctaaaggattt 261

                                                                       
Query: 62  tttcccctatattgtgacgagaaccccaagagatgcccataaaattcattggctatcaga 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 262 tttcccctatattgtgacgagaacctcaagagatgcccataaaattcattggctatcaga 321

                                                                       
Query: 122 gtatcaggttttaaaaccactaatttgggaggttgtttaacagattttgtttttacaata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtatcaggttttaaaaccactaatttgggaggttgtttaacagattttgtttttacaata 381

                                                                       
Query: 182 taagaagtattttagttaaatgttgttttttagcaagggaatggattgtaaagcacagat 241
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taagaagtattttagctaaatgttgttttttagcaagggaatggattgtaaagcacagat 441

                                                                       
Query: 242 ttgtatttatagtgttgagttggaataaaaactgtactttggtattaccttagtatctta 301
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgtacaaatagtgttgagttggaataaaaactgtactttggtattaccttagtatctta 501

                                                                       
Query: 302 aataaaaatgaggtaataataaagaaaaaggtatttttgtttatttgtttgtttgattgt 361
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 502 aataaaaatgaggtaataataaagaaaaaggtatttttgtttgtttgtttgtttgcttgt 561

                                                                       
Query: 362 ttttgttttgtagagatgtaaaaatcacagcagaattttgaataaagagataggactagc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttttgttttgtagagatgtaaaaatcacagcagaattttgaataaagagataggactagc 621

                                                                       
Query: 422 agatttgcatttttaataactcttcttacaccagaaaaacccattggagagaaatgattt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agatttgcatttttaataactcttcttacaccagaaaaacccattggagagaaatgattt 681

            
Query: 482 a 482
           |
Sbjct: 682 a 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no118_f03.g1 MSMg01no118_f03.g1 CHROMAT_FILE:
MSMg01no118_f03.g1 PHD_FILE: MSMg01no118_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:08 2005
         (552 letters)



>mm_chr19_13900179_13901130
          Length = 952

 Score =  928 bits (480), Expect = 0.0
 Identities = 507/516 (98%)
 Strand = Plus / Minus

                                                                       
Query: 37  taaagttccctgctacttgctaggtttatgcaattatcagtatcaaacctgataggactt 96
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 taaacttccctgctacttgctaggtttatgcaattatcagtatcaaacctgataggactt 889

                                                                       
Query: 97  agcacttgctaggaagacagtatccttaccaaatgagttatttcctagccttacatgaca 156
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 888 agcacttgctaggaagacagtatccttaccaaatgagttatttcctagtcttacatgaca 829

                                                                       
Query: 157 ttttaaaaatattttacttatttatttattatgtattggtatctatgtgtgtgcatgcac 216
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 828 ttttaaaaatattttacttatttatttattatatattggtatctatgtgtgtgcatgcac 769

                                                                       
Query: 217 ataggtgtgcccgtgtgtgcatatgtgtgtatgtgtgtgtgtgtaagtcaaaaagggcta 276
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ataggtgtgcatgtgtgtgcatatgtgtgtatgtgtgtgtgtgtaagtcaaaaagggcta 709

                                                                       
Query: 277 tcaggtgacctcctctatcactctcttcctatttgtttgagatggaatctttcattgaac 336
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 708 tcaggtgacctcctctatcactctccgcctatttgtttgagatggaatctttcattgaac 649

                                                                       
Query: 337 ccaagtttgctgtttctgggttagactggaagccaggaaaccccagtgactttcttttct 396
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 648 ccaagtttgctgtttctgggttagactggaagccaggaaaccccagtgacgttcttttct 589

                                                                       
Query: 397 tttatccttgaaggtgggactgcagcacctatggaactccaggcttgctatatgggtgac 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 588 tttatccttgaaggtgggactgcagcacctatggaactccaggcttgctatatgggtgat 529

                                                                       
Query: 457 aatgccaaatgatttttatgattgtgccaaaaagaatcctcaacactgaaccatctctcc 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aatgccaaatgatttttatgattgtgccaaaaagaatcctcaacactgaaccatctctcc 469

                                               
Query: 517 atcatcacaatttatttttaattatttaattatttt 552
           ||||||||||||||||||||||||||||||||||||
Sbjct: 468 atcatcacaatttatttttaattatttaattatttt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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