Query= MSMg01no120_d21.b1 MSMg01no120_d21.b1 CHROMAT_FILE:
MSMg01no120_d21.b1 PHD_FILE: MSMg01no120_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:37 2005
(602 letters)
>mm_chr19_52593782_52594784
Length = 1003
Score = 1052 bits (544), Expect = 0.0
Identities = 588/608 (96%), Gaps = 12/608 (1%)
Strand = Plus / Minus
Query: 5 gaattcaggtcccc-gagcagccatatattcacctccataaacaatctactgagttcttg 63
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattcagg-cccctgagcagccatatattcacctccataaacaatctactgagttcttg 690
Query: 64 ccaacttgtaatgagaaaacagtaatccctggcatgctggtattgtgattaattaaattg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccaacttgtaatgagaaaacagtaatccctggcatgctggtattgtgattaattaaattg 630
Query: 124 tcacctatggttgattgtgctaaaatgtctaaagacacttgtgaaaccgaatgtcttctt 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcacctatggttgattgtgataaaatgtctaaagacacttgtgaaaccgaatgtcttctt 570
Query: 184 ttgatgtaaatgggctagaatgttttattactgcagtggagaccatgaaaaccagaagtg 243
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 569 ttgatgtaaatgggctagaatgttttattactgcagtggagacaatgaaaaccagaagtg 510
Query: 244 acaagctcgggcctttaaactcttagtccaattaacaaactacaagagattctccatgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acaagctcgggcctttaaactcttagtccaattaacaaactacaagagattctccatgtg 450
Query: 304 acaggtattgatataccagtcaggcacaaactccaatactgacatgcctcttgtccatgg 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acaggtattgatatactagtcaggcacaaactccaatactgacatgcctcttgtccatgg 390
Query: 364 ctacctgtgctcattgctgtaaggggctgtgaatttgttgttagttgcctatttgtgctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctacctgtgctcattgctgtaaggggctgtgaatttgttgttagttgcctatttgtgctg 330
Query: 424 aaagccttttgtcaacaggctgacacatttccgagctggcttcagagaagagtggggtgt 483
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaagccttttgtcaagaggctgacacatttccgagctggcttcagagaagagtggggtgt 270
Query: 484 gtctgccattccaaagatgctgtgttcctttcagctgagacaaagaatgcaatgaagaat 543
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct: 269 gtctgccattccaaagatgctgtgttcctttcagctgagacagagtattcaatgaagaat 210
Query: 544 ---------aaaagtgacagtatttggttgtgtaagagtttcctccacaagtaaaacatt 594
||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 209 taaaaaaaaaaaagtgacagtatttggttgtgtaagagtttcttccacaagtaaa-catt 151
Query: 595 ccatcctg 602
||||||||
Sbjct: 150 ccatcctg 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_d21.g1 MSMg01no120_d21.g1 CHROMAT_FILE:
MSMg01no120_d21.g1 PHD_FILE: MSMg01no120_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:37 2005
(624 letters)
>mm_chr19_52516673_52517696
Length = 1024
Score = 1168 bits (604), Expect = 0.0
Identities = 619/624 (99%)
Strand = Plus / Plus
Query: 1 tattgtaagaagaatcacctctgatgagagttgagtgatgctcagttgtaggtcctttgc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgtaagaagaatcgcctctgatgagagttgagtgatgctcagttgtaggtcctttgc 260
Query: 61 agagagagactccatagtccgtagacttgtaaaggaatgaaccaggaggaaaggccaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagagactccatagtccgtagacttgtaaaggaatgaaccaggaggaaaggccaaga 320
Query: 121 gaggcctccaagaagtagctttgcattttaacttcatcactggatgcttacgcccgtatg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gaggcctccaagaagtagctttgcattttaacttcatcattggatgcttacgcccgtatg 380
Query: 181 tggagaacttttgtcactctctttttatcaagtgctcattcataatgtgtccccagccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagaacttttgtcactctctttttatcaagtgctcattcataatgtgtccccagccag 440
Query: 241 ctggaaaagaagcacaaagaacatttagacaactgtggctcctatgccaaggcttcgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaaaagaagcacaaagaacatttagacaactgtggctcctatgccaaggcttcgact 500
Query: 301 gacaactgacccaggcagggtgagcagcagctgtacatcccaaggcagcttagctatggg 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gacaactgacccaggcagggtgagcagcagctgtacatcccaagacagcttagctatggg 560
Query: 361 ggaggggtaaaagcaggatgaatcattgacacttaggtttcaaatgtgaaagcacatttt 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggggtaaaagcgggatgaatcattgacacttaggtttcaaatgtgaaagcacatttt 620
Query: 421 aagcaacccagactgactgtctttttctcaatcctttcacactcaccccagtgctgggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcaacccagactgactgtctttttctcaatcctttcacactcaccccagtgctgggca 680
Query: 481 cacacataatcctggagttctcaggatcacatgagaaatgtactaatacaccaagcaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacacataatcctggagttctcaggatcacatgagaaatgtactaatacaccaagcaact 740
Query: 541 ccccagacccaggcaagaatgagatggcacttctacagagcagtttaggatctgaggaaa 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 ccccagacccaggcaagaatgagatagcacttctacagagcagtttaggatctgaggaaa 800
Query: 601 ggctagttggctgactctacattc 624
||||||||||||||||||||||||
Sbjct: 801 ggctagttggctgactctacattc 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
