BAC Information

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BAC

Clone NameMSMg01-120E04
Chromosome19 (Build37)
Map Location 48,637,863 - 48,638,323
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneSlk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120E04.T7 (MSMg01no120_e04.b1)MSMg01-120E04.TJ (MSMg01no120_e04.g1)
ACCAG330672AG330673
length698689
length of high quality
(start - end)
491 (57 - 547)463 (59 - 521)
definitionCHROMAT_FILE: MSMg01no120_e04.b1 PHD_FILE: MSMg01no120_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:38 2005CHROMAT_FILE: MSMg01no120_e04.g1 PHD_FILE: MSMg01no120_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATTCCGAGAGGACCGCGGAATTCGTATTCTG
CTAGTGGCCTTCAGATGAAGATGTAGAACTCTCAGCTTCTCCTGCATCAT
GTATGCCTGGATGCTGCCATGCTCCCACCTTGATGATAATAGACTGAACC
TGTAAGCCAACCCCAATTAAATGTTTATGAGACTTGTATTGGTCATGGTG
TCTGTTCAATGCAGTAAAACCCTAAGACAATGCACCTCACTATTTTTTGA
CTCCCATTTCCTTTGTATCCACTATTGGCCCTCACAATGCCCTCCCCTGC
ATCCTGCAAAAGAAAATAGAAAATAAAAATAAACATCTCATCGTGGAAGC
TTCAGTTCATCCCAGTGTGTCCCATGGAATACACTGCCATCCACACGTCT
TTACTTGCAACTGATCATTGCAATGTGTCATTGGTCTGAGAGGAGACCTC
TGGCTTCTGCTACATTATCAGTACTGGATGCTCACTGGGACTTTTCTTGG
TTATCTTGTTGATGCCCTGTGTCAATGGAGATCCTTCAGCTTTGAATCTG
CATAGTCAGTACCTTCACATGCTACAGCAGTTCACAGTTGGAGTAGATAT
TGAGGTGGCCCAACTCAAAGGCCTAGGTAGGAGCCTTCGTGGTAGCCAGA
TAAGTCAGCCTGCCAGCTCTTCTTGGATCATGCCACCAGGTGAACTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATCAGAGATATACACGTGGCAGTCGTCAGTGCACTGGCCACCCAT
CCACTCTTTGACATTTCTCTGAGTCTTCCACCCCAAGCCCAGTGCTTGAT
ACAGGGTGGGTGCTTTCTGATGCTCTCTAGGATATGAACCCTCTACTCTT
CTGTCTGATGTTACTGCCTGCATGAGTCTGAGCTCCGTAAAGACTTGTTT
TGCTTAAATGAACCCAAATGTGTTTAAAGGAAGGATTATTACATAAAAGA
ATAAGGTCTATCCGCTCCATCTAGGCTGAGCAATGGCCTCATGTACAGCA
TGAGGGAACCACAGGGTGGCCCTTCCCCCAACCTGCTGTCCTTACATAAA
CATACAAAATGACCAGCAGGCCAGAGGCAAAGGTTAATCACATCACCTGG
GTGGCCCCCACCACACATCTTAGTATCTGGCGGAACATTTGGAGCATGCA
GACATCTCATTTTGATTTTTGGAAGCACGCACTTTCCCTGGGGTCCGGGG
GAAAATTTTTTTTCCCTTTTCTACCACTGCCACCATAACTTATTCCGCCC
ACTCTTCGCGCTATACCCCCCTTTCTTTCCCCCTCACCCCTCCTCCTCCC
CTGGCCCAATATACATGGCCCGTTATAAAATCCTCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_e04.g1 MSMg01no120_e04.g1 CHROMAT_FILE:
MSMg01no120_e04.g1 PHD_FILE: MSMg01no120_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
         (463 letters)



>mm_chr19_48637663_48638525
          Length = 863

 Score =  822 bits (425), Expect = 0.0
 Identities = 452/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatatacacgtggcagtcgtcagtgcactggccacccatccactctttgacatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agagatatacacgtggcagtcgtcagtgcactggccacccatccactctttgacatttct 602

                                                                       
Query: 61  ctgagtcttccaccccaagcccagtgcttgatacagggtgggtgctttctgatgctctct 120
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 601 ctgagttttccaccccaagcccagtgcttgatacagggtggatgctttctgatgctctct 542

                                                                       
Query: 121 aggatatgaaccctctactcttctgtctgatgttactgcctgcatgagtctgagctccgt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 541 aggatatgaaccctctcctcttctgtctgatgttactgcctgcatgagtctgagctctgt 482

                                                                       
Query: 181 aaagacttgttttgcttaaatgaacccaaatgtgtttaaaggaaggattattacataaaa 240
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 481 aaagacttgttttgcttaaatgaacccaaatgtgcttataggaaggattattacataaaa 422

                                                                       
Query: 241 gaataaggtctatccgctccatctaggctgagcaatggcctcatgtacagcatgagggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaataaggtctatccgctccatctaggctgagcaatggcctcatgtacagcatgagggaa 362

                                                                       
Query: 301 ccacagggtggcccttcccccaacctgctgtccttacataaacatacaaaatgaccagca 360
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 ccacagggtggcccttcctccaacctcctgtccttacataaacatacaaaatgaccagca 302

                                                                       
Query: 361 ggccagaggcaaaggttaatcacatcacctgggtggcccccaccacacatcttagtatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggccagaggcaaaggttaatcacatcacctgggtggcccccaccacacatcttagtatct 242

                                                    
Query: 421 ggcggaacatttggagcatgcagacatctcattttgatttt 461
           ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcagaacatttggagcatgcagacatctcattttgatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)