Query= MSMg01no120_e23.b1 MSMg01no120_e23.b1 CHROMAT_FILE:
MSMg01no120_e23.b1 PHD_FILE: MSMg01no120_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:42 2005
(483 letters)
>mm_chr19_38075050_38075933
Length = 884
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 1 catggac-aattgcctagattactgggaaaactgtctgaaactgcagtgacattctggtc 59
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catggacaaatagtctagattactgggaaaactgtctgaaactgcagtgacattctggtc 625
Query: 60 ttgtgcaatagaatctactattcccagagaggagagcagcttaacactaggagtcactga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgtgcaatagaatctactattcccagagaggagagcagcttaacactaggagtcactga 565
Query: 120 gatatgagtgacaggtccacacttacagcctggtcctatttctgaggtctgagaacctgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatatgagtgacaggtccacacttacagcctggtcctatttctgaggtctgagaacctgg 505
Query: 180 atatacacctgtacctccaaatatggcgtaccgacaccaacagcaagacttcagaaatga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atatacacctgtacctccaaatatggcgtaccgacaccaacagcaagacttcagaaatga 445
Query: 240 tgtgttcactctgacctcaaccagcacttttttactgatggtgcaaacgattgaagccaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtgttcactctgacctcaaccagcacttttttactgatggtgcaaacgattgaagccaa 385
Query: 300 agccttgaggatactaggcaagggctgccctccaaacccaccttcagagtttttaaagaa 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 agccttgaggatactaggcaagggctgccctccaaatccaccttcagagtttttaaagaa 325
Query: 360 tacattctaagatgaaacagcattctataaaatgcattttcctgtttattacttatgcct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacattctaagatgaaacagcattctataaaatgcattttcctgtttattacttatgcct 265
Query: 420 gtgagtacacattgcctagagttacatgaaaataatcaaccagtctctctaccatgtgct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgagtacacattgcctagagttacatgaaaataatcaaccagtctctctaccatgtgct 205
Query: 480 attt 483
||||
Sbjct: 204 attt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 884
Length adjustment: 10
Effective length of query: 473
Effective length of database: 874
Effective search space: 413402
Effective search space used: 413402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_e23.g1 MSMg01no120_e23.g1 CHROMAT_FILE:
MSMg01no120_e23.g1 PHD_FILE: MSMg01no120_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:42 2005
(411 letters)
>mm_chr19_37935330_37936139
Length = 810
Score = 772 bits (399), Expect = 0.0
Identities = 408/411 (99%), Gaps = 1/411 (0%)
Strand = Plus / Plus
Query: 1 tcagctattttaattattatattattttagtaattcaacagatctctcaataagatgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctattttaattattatattattttagtaattcaacagatctctcaataagatgtaa 260
Query: 61 ggaccatcatgtaggtgacaccatcattatcagtgtcaacaaaattaatagcgattccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaccatcatgtaggtgacaccatcattatcagtgtcaacaaaattaatagcgattccta 320
Query: 121 attgctatataatattgtgagatagtaaattatgtacacttttctccaatacaagaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 attgctatataatattgtgagatagtaaattatgtacacttttctccaatataagaaaat 380
Query: 181 atggagatacagtatgtattagcaattctgtagcaattctactcccaggaatgtagctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggagatacagtatgtattagcaattctgtagcaattctactcccaggaatgtagctca 440
Query: 241 aagaataggtgtactaaacaggaattcatacctgttgtggttcagcggttgaatacttgc 300
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 aagaataggtg-actaaacaggaattcatacctgttgtggttcagtggttgaatacttgc 499
Query: 301 ctggcatggacaaagtcctaagcttgccttccagaacagcaaacaacagcacctgctcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctggcatggacaaagtcctaagcttgccttccagaacagcaaacaacagcacctgctcac 559
Query: 361 ttgtcaatagccactccattctcagtagtcaacacaggaaaacatggctgg 411
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtcaatagccactccattctcagtagtcaacacaggaaaacatggctgg 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 810
Length adjustment: 9
Effective length of query: 402
Effective length of database: 801
Effective search space: 322002
Effective search space used: 322002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
