BAC Information

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BAC

Clone NameMSMg01-121B15
Chromosome19 (Build37)
Map Location 33,127,246 - 33,127,363
singlet/doubletsinglet
Overlap genenone
Upstream geneAsah2, EG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
Downstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121B15.T7 (MSMg01no121_b15.b1)MSMg01-121B15.TJ (MSMg01no121_b15.g1)
ACCAG331302AG331303
length678683
length of high quality
(start - end)
83 (89 - 171)118 (190 - 307)
definitionCHROMAT_FILE: MSMg01no121_b15.b1 PHD_FILE: MSMg01no121_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:46 2005CHROMAT_FILE: MSMg01no121_b15.g1 PHD_FILE: MSMg01no121_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCGCAGAGATCCGCGGAAT
TCACATATTCCCAAAACCATAAGTACATCCAAGGCAGCTTCCCTTGATCT
GATCAGTTACAAGTTGCCCTCCTAACTTCCATTGCACATGAGCTATATAG
TGGCAAACCAGAAAGAAGCAGTGCTCTGTCATTAGCTTCAAGCACTGAAC
TTGTGGTACAAAGTTGAGGCTTAAGCAAATGTTGGCATGAACAGTGCTGC
TATTGACTACAGTATTAGGAATGAACACACAGTAGCACTGAGGATAGGTG
CTTTGTTATCAGCATCACGGTATTCTTTAGCATGCCCAAAATGTCAATAC
CAGGTGAAGAAGACCACCCGCACGGAACAGAATCAAGCCCATGTAAAACA
GGGCACACATCATGAACTACAAAATACTTTCACCCACCATGTTGCATAGC
CCATGAATTTGATCTTAACATGTTAATCTCTGCTACTCATGAGAGGAGAA
CATTATTGGACGTTGCTTGACTGCCTTCCTAGAGGAGACCAGACAAGCAC
ATACTTAATACAGTTTTGCCCAACGACCAACCTAGGAAGAAAGAAAGGAA
CAGTATCATGAAACCCGTACTTGTTGTTCCTCAGGATACCGACACCTACT
AATTCGCTTCATATTATATTCTTACGAG
ATGAACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAAGTCATGTCCGAAACATCCATCCCTGT
CCTATTCAAGGACCCCCCATCGCCACTCACAGACCAGTCTTCTGAAAGGG
GAAAGAAATGAAGAAGATCCATCTGCATAAGTGATGGGAAGATTATGCAC
AGTGAGAAATTTGGTGAGAAAAGTGATCCCAAATGAATAGACAAACAGGG
AAAAACTAATGAATTTCAGATTCTAAACCTTTGACTGGAGTACTCCAGAG
AGTCCCAGGGCGTTATTGATAAGTAAGGGTCTAAGAGCTCTGTCCTGATT
TTTTTTCTCTCCCCCCCCACCCGCAAATGTGAATCTTCAGTGGCTGCCAC
ATGCCACTCCACACAAAAACATGAGTTTGCTGACGGCTGAGACTGATTGC
CCTTGGTTTAATTACTAATACATTTCGGGACAGTGAGCTCTGACTTACTG
TCTTCTTAAAGACACACACAACCAAGGAGTGTGTGTGTGGGGTACAGAGA
GAGAGATAGCGGGAGAAAGAGACGGTGGTTATATTTTCTTGACGCACTTC
TAACGTTTATCCACCTTGTGTGCGGTTTGATATTGGCCTCATTCTATGTC
CCATCAAGTTAACTGTGCTGCCGCCTCTCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_b15.g1 MSMg01no121_b15.g1 CHROMAT_FILE:
MSMg01no121_b15.g1 PHD_FILE: MSMg01no121_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:46 2005
         (118 letters)



>mm_chr19_33127046_33127563
          Length = 518

 Score =  221 bits (114), Expect = 2e-62
 Identities = 117/118 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattatgcacagtgagaaatttggtgagaaaagtgatcccaaatgaatagacaaacagg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agattatgcacagtgagaaatttggtgagaaaaatgatcccaaatgaatagacaaacagg 260

                                                                     
Query: 61  gaaaaactaatgaatttcagattctaaacctttgactggagtactccagagagtccca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaactaatgaatttcagattctaaacctttgactggagtactccagagagtccca 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)