BAC Information

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BAC

Clone NameMSMg01-121L16
Chromosome19 (Build37)
Map Location 20,540,418 - 20,540,548
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L16.T7 (MSMg01no121_l16.b1)MSMg01-121L16.TJ (MSMg01no121_l16.g1)
ACCAG331768AG331769
length758731
length of high quality
(start - end)
129 (69 - 197)291 (69 - 359)
definitionCHROMAT_FILE: MSMg01no121_l16.b1 PHD_FILE: MSMg01no121_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:36 2005CHROMAT_FILE: MSMg01no121_l16.g1 PHD_FILE: MSMg01no121_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATAATTTGCGGCGCTATACGACTCCTATCAGAAGAGGATCCGCGG
AATTCAAATTTCCACATCACTCTTGAAATTACTGTTTGAACAGATTCCCT
TAGTGAATCTGAAAGTCACCAATCTATCTAGCCTTCCCTGACTGCTGCCT
CAGCAATCAATTAACAAGCTGGTAGTGCTCTTTTTTGAGGTGGGGTGGGG
TGGAGGGCCCTCCCCTTCTTCCTCTCTTCCCTTCCTCTCCCTATTTCTCC
TTCTCTCCCCTTTCTTCCCTTCTCTTCTCTCTTTCTCCTTTTCTTCCCTT
TCCCCCTTCTTCCTTTTTTTTTTTTTTTTTTTTTTCCTTCCTCCTCTTTT
TCTTCTATTTTTTTTTTTTTCCCCCCCCTCCCCGCCCTTTTTTTTTTTCT
TTTCTCCTTTCTCCTTTTTTCCCCCCCCCATAAATAACTACTCCTCCCCC
TGCGGGTTTTCTTTTCCCCTTTTTTCTCCCTCCCTTCTTCTCCCCTTCTC
TCTTCCTCTTTTCCCCCCCTCTTTCCCCCCCTCTTTTTTCCCTTGCCCCC
CTTTCTTTTTTTCTTCCCCCCCCTTTTCTTTTTTCTCTTTTTTCCCTTCT
TTTCCCCCTCCCCTCCCCTTTCCTCCCTCCCCCCCTCCTCTTTCTTTCCT
CTTACTTTTCTCCCCTTTACCTCTCTCTCTCTCTTTTCTTTTCCTTTCCC
CTCCCCTCCTCCCCCCCTCCTCTTACCTCTCCACCCCTTTGCCTCCCTTA
CTCCCCCC
GAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGTACATTGGAAAAGAGTTTCTAACTGAACA
CTGATAGTGCAGATAAAAAGATCAACTATTAATAAGTGGAACATCATGAA
ACTGAAATGTTTCTGTAAGTGAAAGGTCACACCCATACAAACAGAAACAG
CAGCCTACAGAATGGAAAAAGATATTTCCAAGGCCACATCCAACCGAGGA
CTAATATATAAAATATACAAACAACTCAAGAAATTAGATATTGAAAAACA
AAATCTACTTTTTCAAGTGGTATACAGATCTATAGAGAGAATTATCAATA
TCAGAATCTCATATGATTGACCACCCCCGACAGAAATATTCAACATCCTT
AGCCATCAGGGAAATGCAAATCAGAACTACTTTGACATTCCATCATACAC
CTGTCAGAATAGCTAAAATCAATAACACACGTGACAGCTCATGCTGGCAA
GATATGGGGAAAGGGAGCCCTCTTCCAATACTGGCGGAAATAAAAACTTA
TACAGCTACTTTGAAAACCAATATTTTGCTTCCTAAGAAAGTTGGTAATC
AATCTACCTCAAGGTCTAGATAAATCACTCTTGACCATATACCCAAAGGA
CCGTTCCATCCTACCCCAGAGATGCTTCGCTAGACCATGCCCATTGCTGC
TCTATTCACAATAACCCCTAACCCGAAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l16.b1 MSMg01no121_l16.b1 CHROMAT_FILE:
MSMg01no121_l16.b1 PHD_FILE: MSMg01no121_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:36 2005
         (129 letters)



>mm_chr19_20540218_20540748
          Length = 531

 Score =  234 bits (121), Expect = 1e-66
 Identities = 128/131 (97%), Gaps = 2/131 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttgaaattactgtttgaacagattcccttagtgaatctgaaagtcaccaatctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 331 actcttgaaattactgtttgaacagattcccttagtgaatctgaaagtcaccaatttatc 272

                                                                       
Query: 61  tagccttccctgact--gctgcctcagcaatcaattaacaagctggtagtgctctttttt 118
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tagccttccctgactctgctgcctcagcaatcaattaacaagctggtagtgctctttttt 212

                      
Query: 119 gaggtggggtg 129
           |||||||||||
Sbjct: 211 gaggtggggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 531
Length adjustment: 8
Effective length of query: 121
Effective length of database: 523
Effective search space:    63283
Effective search space used:    63283
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)