Query= MSMg01no122_h23.b1 MSMg01no122_h23.b1 CHROMAT_FILE:
MSMg01no122_h23.b1 PHD_FILE: MSMg01no122_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:00 2005
(592 letters)
>mm_chr19_13730512_13731503
Length = 992
Score = 1093 bits (565), Expect = 0.0
Identities = 585/593 (98%), Gaps = 4/593 (0%)
Strand = Plus / Plus
Query: 1 acctgcctctgcctcccaagtgctgggattaaaggggtgcaccactactgcc-ggctagt 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 acctgcctctgcctcccaagtgctgggattaaaggggtgcaccactactgcccggctagt 259
Query: 60 ctttatcttaagatggtatgtatcagtgttatcattaagtgatttcagtgtttctaaaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctttatcttaagatggtatgtatcagtgttatcattaagtgatttcagtgtttctaaaat 319
Query: 120 atcgataatgcatgtagcatataatatccttgtctgtaaacataaccattttctatcagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atcgataatgcatgtagcatataatatccttgtctgtaaacataaccattttctatcagt 379
Query: 180 cttcaaaagtattttcttttataataatagaataatctctcagtagagaaatccagagac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttcaaaagtattttcttttataataatagaataatctctcagtagagaaatccagagac 439
Query: 240 tttgccctctattttcagaaaactaagtatgtatataaatcctacagagaataatttctc 299
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 tttgccctctattttcagaaaactaagtatgtaaataaatcctacagagaataatttctc 499
Query: 300 tacaagtatgggacttactttggggcagatctaagagctggcagagtactcagtacgaat 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacaagtatgggacttagtttggggcagatctaagagctggcagagtactcagtacgaat 559
Query: 360 caattttgtactgaccatgtttctaaagtgactcctcttccttccctttaaatgtggaac 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 caattttgtactgaccatgtttctaaagtgactccgcttccttccctttaaatgtggaac 619
Query: 420 tctctagtcaatttaaataggggactggtgctaactactttgaatatggtttgcactttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctctagtcaatttaaataggggactggtgctaactactttgaatatggtttgcactttg 679
Query: 480 gagcactgaaatgtgtttaggcaaagaaaacaaacaacaaacaaaaaaaaaacccaacaa 539
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 gagtactgaaatgtgtttaggcaaagaaaacaaacaacaaacaaaaaaa---cccaacaa 736
Query: 540 caacaacaaaaacatctgattgatggaatgttccatatgactttgaaaagaat 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 caacaacaaaaacatctgattgatggaatgttccatatgactttgaaaagaat 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_h23.g1 MSMg01no122_h23.g1 CHROMAT_FILE:
MSMg01no122_h23.g1 PHD_FILE: MSMg01no122_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:00 2005
(354 letters)
>mm_chr19_13863672_13864424
Length = 753
Score = 617 bits (319), Expect = 0.0
Identities = 344/353 (97%), Gaps = 3/353 (0%)
Strand = Plus / Minus
Query: 3 atctcgttttaattctaggta-tttttttctctaatattttaaataaccacttaaagcat 61
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atctcgttttaattctaggtattttttttctctaatattttaaataaccacttaaagcat 494
Query: 62 ttagggttttcctgaaaatactaattattgttatttctcactagttagcaaaattttaaa 121
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 493 tcagggttttcctgaaaatactaattattgttatttctcactagttaacaaaattttaaa 434
Query: 122 atgttgaattatacatatttttagaattatttttgtactatcataattgcattctgattt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgttgaattatacatatttttagaattatttttgtactatcataattgcattctgattt 374
Query: 182 ttgctttactaaagtttatttcatatgccaaaatagccacaaatttaactcaggaaacta 241
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgctttacgaaagtttattccatatgccaaaatagccacaaatttaactcaggaaacta 314
Query: 242 ttgtacttatgtgtgtgcataatttatatgtgtacgtaatttctctcctcaaagtatctt 301
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 313 ttgtacttatgtgtgtgcataatttatatgtgtatgtaatttctctcctcaaagtatctt 254
Query: 302 tgtactctttatagtttcttttatatcccctttcttaccacatcctcacccca 354
|||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 253 tgtactctttatagtttctt--atatcccctttcttaccacttcctcacccca 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 753
Length adjustment: 9
Effective length of query: 345
Effective length of database: 744
Effective search space: 256680
Effective search space used: 256680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
