BAC Information

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BAC

Clone NameMSMg01-122J22
Chromosome19 (Build37)
Map Location 42,015,332 - 42,138,569
singlet/doubletdoublet
Overlap geneZdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik
Upstream geneBlnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1
Downstream geneBC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122J22.T7 (MSMg01no122_j22.b1)MSMg01-122J22.TJ (MSMg01no122_j22.g1)
ACCAG332431AG332432
length1,1801,159
length of high quality
(start - end)		723 (38 - 760)626 (128 - 753)
definitionCHROMAT_FILE: MSMg01no122_j22.b1 PHD_FILE: MSMg01no122_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:17 2005CHROMAT_FILE: MSMg01no122_j22.g1 PHD_FILE: MSMg01no122_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,015,332 - 42,016,037)(42,137,961 - 42,138,569)
sequence
CATAAATNNNNNNGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCTAGAGATCTGACTGCTTCTGCCTCTTGAGTTCGGGGAGT
AAGGGCGTATGCCATCCTTGCCTGGCTCCATTTGGTAATTTTAAGGGAGG
GCAGCATTAAGAAAACCCTTTTTAGATGCCATTGTCCTGGTCTGAGGCTG
GCAAAGAATGCTTTTCTTATATATTTTTGGGGCAGAGAACAATGGAATGT
GGCTATAAGTACCAATGGTACAATCATGCTTGTTATGGGACAAGGTTTAA
GTAAAGCTCCTGTTTTATTGATCACAAAAGAACATAGCTCTATTTACTGA
GAAGGGAAATCAGAAACTTAGAGGAATAAATGGATTTGTTCTGTAGTGCA
CAGCTAGGAGTTGCAGAGTTGGAATATGAATTTCTGACAACCAAGTACAA
CCCCTTATGCTTGTATGAGCCTTCACTATCTTCTGAGCATGGACATTTTA
AGAAAGTCTACATTTTTCTCAGTGGTAGACTTATTTTCCCATCTTCCTTT
CCATTACCACTTTTCTCCAGCCTACTTTAATAAATCTCTACTTTAAAACG
TAGAATACGTGCTCACCTAGGCCCTATATGAGATCAGGAAAATGAAGCAG
AGAGGCTATGAGCCAGTCATAACCACAAGTTTGACTCCTGTCTTCCAGCT
TCTAAGTTCTATCAATTTTGCCTCTTAGTTCTGTGGCCCTGGCCCTGGGT
GCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCAT
CGAAAGGCATATCAACAAGAATGAGAGGCGCCGGTTACCAGGCAAGGTCA
GGGTGAGTGGTGAAGGGACTGGGTGAGCAAGTGTTGAAGTGATTGTATGT
CTAAATAACAGAACCACGTCCGGGCCTGACTTAAACATCTTCCTAAGCTT
TTGGCTCTAATTTTAAAGCCGGTCTCCTTATTATTGTTATTCTCGTCTGG
CCCTGGATATGTCCCTATTGTTCGGTGTTCTTTAGGTTCTTTATATCCTC
CTTCTCTTCCTCTTTCCTAGTCTTCTCTAAAACTCCTACATCCTTTTGCT
TTACATCGTAATCCTCCTTTTCTTCTCTTTTATAGAATTGGTTGTATATA
TTAATTCTTCTCTTACATTTCCTTTCTCTT

GGTCACCTNNNNAAGCAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTCAGCCCCGGAAGAAAAAAGAAAA
CGGGCTCAGGGCAGACGCAGATATCTGAGTTACAGGGCTGGGACAAGCAA
ATGCGTGAAAAGATATTCAGTGTCCTCAGACACACATTACTGCCCAGCTA
CCAAAAGAGCTGAAATAAGACAGTACAACATGCATGCCAGTGGATGCACA
CACAGCCACATTAGGCTGAGGCAGGAGGATCTCAAGAGCCAACGAGTTCA
AATCCGGCCTGGGCAAACACCGTGAGACTCCATTTCAAATAAAATGAGGA
AATGCATTTTTTTTTCAGCTTGCTTCAGATTTCAAAATAACTTGGATCTA
GATCAGCCTTCCCTGCTAATTCCTTCTTGACCCGCCCCCAAAAGAACTAG
AACACAAGGTCTCAACTGCAGAGTACCTTATTCTGACAGCTTTCCTGGGA
AATCGAAATATCTCCAGGTCTCCCCTGCCAGTCACTCTGACTTGTGGTAT
CTGTCCCTTGTAAAGGCCAGGCTACACTGTCTCGAGGCTTTGGATCTCTA
GGTATAACCCCAGAGTTACCGATGTTGCCATCTGTCAGGATACTTGTTTC
AATGCATGCTTAAAGGCAAAGACTGCCCATATGTTTGTTCAAAATGAGAA
GGGTTGGACATTTAACTGGCCTAAGTGGGAACTCCAATGAATTCCAAAGC
TTGAGAATGGACAGGGATCACTCTCTCTGCAATCAGGGTTTCCTGGGGGA
GGCTGTGGGGGTCGCCATACTAGGACATTCTCTAAATGGACTTTCTGAGA
GGGAAGCATTGAACAGGAACCCCTTGTCAGTACAGCCTGGGAGCTCACCG
CAGTGTTGGCCTCGATGAGAACGTGCTGTAGTTCCCTGGCAGCTTCCCCC
TGCCTGTGAAGCAAAGTCCCTCCAGCTGGCACCCCCTGGCCCCCCAAAAC
TTGGCCCAACCCCATATGCCCCCCACAGCTTCCGCCCAAAGGAAAACCCA
AACTTCCCTCCGGGGAAAACTACTTTGTTACCAAAAATTCCCAACCTTGG
GGCTCCCTACCCTTTTCCTTTTGAAAACCCTGGAAGTTAAAATTCCCATA
ACCCTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_j22.b1 MSMg01no122_j22.b1 CHROMAT_FILE:
MSMg01no122_j22.b1 PHD_FILE: MSMg01no122_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:17 2005
         (723 letters)



>mm_chr19_42015115_42016237
          Length = 1123

 Score = 1342 bits (694), Expect = 0.0
 Identities = 703/706 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcctagagatctgactgcttctgcctcttgagttcggggagtaagggcgtatgcca 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcctagagatctgactgcttctgcctcttgagttcggggagtaagggcgtatgcca 277

                                                                       
Query: 78  tccttgcctggctccatttggtaattttaagggagggcagcattaagaaaacccttttta 137
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcattgcctggctccatttggtaattttaagggagggcagcattaagaaaacccttttta 337

                                                                       
Query: 138 gatgccattgtcctggtctgaggctggcaaagaatgcttttcttatatatttttggggca 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gatgccattgtcctggtctgaggctggcaaagaatgcttttcttatatatttttggggca 397

                                                                       
Query: 198 gagaacaatggaatgtggctataagtaccaatggtacaatcatgcttgttatgggacaag 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gagaacaatggaatgtggctataagtaccaatggtacaatcatgcttgttatgggacaag 457

                                                                       
Query: 258 gtttaagtaaagctcctgttttattgatcacaaaagaacatagctctatttactgagaag 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtttaagtaaagctcctgttttattgatcacaaaagaacatagctctatttactgagaag 517

                                                                       
Query: 318 ggaaatcagaaacttagaggaataaatggatttgttctgtagtgcacagctaggagttgc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaaatcagaaacttagaggaataaatggatttgttctgtagtgcacagctaggagttgc 577

                                                                       
Query: 378 agagttggaatatgaatttctgacaaccaagtacaaccccttatgcttgtatgagccttc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agagttggaatatgaatttctgacaaccaagtacaaccccttatgcttgtatgagccttc 637

                                                                       
Query: 438 actatcttctgagcatggacattttaagaaagtctacatttttctcagtggtagacttat 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 actatcttctgagcatggacattttaagaaagtctacatttttctcagtggtagacttat 697

                                                                       
Query: 498 tttcccatcttcctttccattaccacttttctccagcctactttaataaatctctacttt 557
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tttcccatcttcctttccattaccacttttctccagcctactttaataaatctctacttt 757

                                                                       
Query: 558 aaaacgtagaatacgtgctcacctaggccctatatgagatcaggaaaatgaagcagagag 617
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aaaacgtagaatatgtgctcacctaggccctatatgagatcaggaaaatgaagcagagag 817

                                                                       
Query: 618 gctatgagccagtcataaccacaagtttgactcctgtcttccagcttctaagttctatca 677
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gctatgagccagtcataaccacaagtttgactcctgtcttccagcttctaagttctatca 877

                                                         
Query: 678 attttgcctcttagttctgtggccctggccctgggtgccctaacca 723
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 878 attttgcatcttagttctgtggccctggccctgggtgccctaacca 923


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no122_j22.g1 MSMg01no122_j22.g1 CHROMAT_FILE:
MSMg01no122_j22.g1 PHD_FILE: MSMg01no122_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:17 2005
         (626 letters)



>mm_chr19_42137544_42138569
          Length = 1026

 Score = 1178 bits (609), Expect = 0.0
 Identities = 609/609 (100%)
 Strand = Plus / Minus

                                                                        
Query: 18   aagcaaatgcgtgaaaagatattcagtgtcctcagacacacattactgcccagctaccaa 77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aagcaaatgcgtgaaaagatattcagtgtcctcagacacacattactgcccagctaccaa 967

                                                                        
Query: 78   aagagctgaaataagacagtacaacatgcatgccagtggatgcacacacagccacattag 137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966  aagagctgaaataagacagtacaacatgcatgccagtggatgcacacacagccacattag 907

                                                                        
Query: 138  gctgaggcaggaggatctcaagagccaacgagttcaaatccggcctgggcaaacaccgtg 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906  gctgaggcaggaggatctcaagagccaacgagttcaaatccggcctgggcaaacaccgtg 847

                                                                        
Query: 198  agactccatttcaaataaaatgaggaaatgcatttttttttcagcttgcttcagatttca 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846  agactccatttcaaataaaatgaggaaatgcatttttttttcagcttgcttcagatttca 787

                                                                        
Query: 258  aaataacttggatctagatcagccttccctgctaattccttcttgacccgcccccaaaag 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786  aaataacttggatctagatcagccttccctgctaattccttcttgacccgcccccaaaag 727

                                                                        
Query: 318  aactagaacacaaggtctcaactgcagagtaccttattctgacagctttcctgggaaatc 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726  aactagaacacaaggtctcaactgcagagtaccttattctgacagctttcctgggaaatc 667

                                                                        
Query: 378  gaaatatctccaggtctcccctgccagtcactctgacttgtggtatctgtcccttgtaaa 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  gaaatatctccaggtctcccctgccagtcactctgacttgtggtatctgtcccttgtaaa 607

                                                                        
Query: 438  ggccaggctacactgtctcgaggctttggatctctaggtataaccccagagttaccgatg 497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  ggccaggctacactgtctcgaggctttggatctctaggtataaccccagagttaccgatg 547

                                                                        
Query: 498  ttgccatctgtcaggatacttgtttcaatgcatgcttaaaggcaaagactgcccatatgt 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  ttgccatctgtcaggatacttgtttcaatgcatgcttaaaggcaaagactgcccatatgt 487

                                                                        
Query: 558  ttgttcaaaatgagaagggttggacatttaactggcctaagtgggaactccaatgaattc 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  ttgttcaaaatgagaagggttggacatttaactggcctaagtgggaactccaatgaattc 427

                     
Query: 618  caaagcttg 626
            |||||||||
Sbjct: 426  caaagcttg 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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