Query= MSMg01no122_n08.b1 MSMg01no122_n08.b1 CHROMAT_FILE:
MSMg01no122_n08.b1 PHD_FILE: MSMg01no122_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:45 2005
(274 letters)
>mm_chr19_25267020_25267694
Length = 675
Score = 462 bits (239), Expect = e-135
Identities = 254/259 (98%), Gaps = 1/259 (0%)
Strand = Plus / Minus
Query: 17 gaattc-caggcctcctgtttgctacctttgattccccctaagttgaacagacttagaat 75
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcacaggcctcctgtttgctacctttgattccccctaagttgaacagacttagaat 416
Query: 76 ttctgcaggggatcctcagatggagaaggcgttggctgggaaggacaatggttatgggtt 135
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttctgcaggggatcctcagatagagaaggcgttggctgggaaggacaatggttatgggtt 356
Query: 136 tttgggtgtggtggcgtgaagagccaacatcaaggggcccactagacagaaagcactaac 195
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tttgggtgtggtggtgtgaagagccaacatcaaggggcccactagacagaaagcactaac 296
Query: 196 taggcttatatgtctctccatcagaggcagtcttagttctatgctgaacttgtgtgtgat 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 taggcttatatgtctctccatcagaggcagtcttagttctatgctgaacttgtgtgtgat 236
Query: 256 gcttatgaccggaatgcaa 274
| ||||||| |||||||||
Sbjct: 235 ggttatgacaggaatgcaa 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space: 176490
Effective search space used: 176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no122_n08.g1 MSMg01no122_n08.g1 CHROMAT_FILE:
MSMg01no122_n08.g1 PHD_FILE: MSMg01no122_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:45 2005
(521 letters)
>mm_chr19_25206121_25207041
Length = 921
Score = 996 bits (515), Expect = 0.0
Identities = 515/515 (100%)
Strand = Plus / Plus
Query: 7 aaactctggcaattggtgacagactagtaccaagtgtatgcctccagtccccccacagcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aaactctggcaattggtgacagactagtaccaagtgtatgcctccagtccccccacagcc 266
Query: 67 ctccccactaccctccacctcacaccctgcccctccgagctgcagaatactcaaggcccc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctccccactaccctccacctcacaccctgcccctccgagctgcagaatactcaaggcccc 326
Query: 127 atcttaggttcacatttccccaccattcctcccttagtcagtctttcttgagctccgtaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcttaggttcacatttccccaccattcctcccttagtcagtctttcttgagctccgtaa 386
Query: 187 ctgactctgtcctgtctgttgacatgtctctggctgctggggtacaggtggccccaccac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgactctgtcctgtctgttgacatgtctctggctgctggggtacaggtggccccaccac 446
Query: 247 cgtagtccccgacccccgataccacacatatggacgcacatctgccgctgcagtgagttc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cgtagtccccgacccccgataccacacatatggacgcacatctgccgctgcagtgagttc 506
Query: 307 aaagctgatgcaggcccgtgtgatgagcagcagcaacccagacctgactgggtcacactg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaagctgatgcaggcccgtgtgatgagcagcagcaacccagacctgactgggtcacactg 566
Query: 367 tgcagccgatgaggaagttaagaacatcatgtcttcaaaggtagggatgggggtggggag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgcagccgatgaggaagttaagaacatcatgtcttcaaaggtagggatgggggtggggag 626
Query: 427 ggggcacatgtactcttgttttgcttcttagctgatgtctactgtatgcacttctaggta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggggcacatgtactcttgttttgcttcttagctgatgtctactgtatgcacttctaggta 686
Query: 487 cagcttgatattttgatatgtaagtattttgtatg 521
|||||||||||||||||||||||||||||||||||
Sbjct: 687 cagcttgatattttgatatgtaagtattttgtatg 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
