BAC Information

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BAC

Clone NameMSMg01-122P21
Chromosome19 (Build37)
Map Location 48,605,285 - 48,605,818
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneObfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122P21.T7 (MSMg01no122_p21.b1)MSMg01-122P21.TJ (MSMg01no122_p21.g1)
ACCAG332712AG332713
length1,0681,074
length of high quality
(start - end)
668 (90 - 757)534 (115 - 648)
definitionCHROMAT_FILE: MSMg01no122_p21.b1 PHD_FILE: MSMg01no122_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:05 2005CHROMAT_FILE: MSMg01no122_p21.g1 PHD_FILE: MSMg01no122_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATATTNNNNNNGTTCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGATGAAAACAGGCCCTTTAAGTTCGATACTGAAGGAC
AGTCTACCTTCAAAAACCTTAACCGAAATGGCAGTATGTCCTAGTATGCA
TGGACAGCTGAATTTCAATGTACAGAGTTAGAATATTCCTTGGGAGAAAC
ATCTCAGCAAAGGTACAGCTGTGACATGGACCTAGACAGCTTGGAAGATG
AGAAAATTAATTTTGAATAGAGTTTGTATTCCACTGGGAAGTGGTAATCA
GATATTTAGAAAATTCTGATTGTGGTCATGAAAACAGTTAAAAGATGTGC
TTGGGCAAGAAGGCCAAAGATGCGGTCAAGGAAACATTTCATAAAGAGAT
TGGGAGGAACAGAAGGAAGGCAGATGGCATTCATTTAGAGGATGGAAGAT
TGGTCCCTGGGGCATTTGGAAGACTCCCAAAGCTACTACTGCCATGATAG
GCCCAGAAAACCAGGGTATTGAGGGCAGAAAGCTTTAAAGGGTTTGGGGC
TTGCTATACAGCATCACCTAAGCCTCTCTTTCCCAGGTTATACTACAGAT
CTCTCTGACTAGCCTTGTTGGGCCTCATGTGTGGCCCTGGCCAAGTCTCT
AGAAAGTGTAAGACATGGACCTCAAGGTCATTCCTGTGGTACTAACGCTA
CAGGTGCAGAGTTCAAGGGCTACAGAAGCCTGGCTGCCCCCACCAACTTT
CCAAGAATGAGAAGCCCTAGGGACCAGGAAGAGGATGCTGCAGGCATGAA
TCCTCAGCTGAATTGTCACTAGGATGGGGGTGGCAGGAGTCCGGCCAGAA
CACAGCGGCTTCCACCTGAAAAAACTCCCAGTGAAGCCCTTGGGGCCTGA
AATTTTTTTCCTAAGTCCTCCAGGAAGCATACCCCCAGGTTTATGGAACC
TACCGCCCTTAAGAAGGGGCCTACCGGGGTACCTCCCAATCCCAAATCCC
ATTTGAATTGCTTGCCTGGAAATGGGGCCCTACCTCCCTCAGAAAAAAAT
CCTTTTTAGGTTTGTGTA
TGGATGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCTTTTCATTTCCCAAAAATCTGTTATATTTATTTATTTT
ATGTGTTTGCATGCTAAGGGCACACCTGCTGTGGTGCGCAGGTAGAGGTC
ACGGGCAGCATTGGCTCCCTTCCGGTTCTCTTCCGGTTCTCTTCCGGTTC
TGAAGACCGAACTGAAGTCCTCAGGATCCTGTAGCAAATGCTCTCAGTTA
CTGAGCCATCTCTTGATGTTTTCCTTGACTTACTTTAGTGGTTGATGCTT
TGTTAAGTGAGGCTTATGTTAAATCCTATAGGACAAGTGGAGATAGAAAT
TAGGTTTAATGCACTTACACTATGTTGGGTTATAAAGTTGGCAGTTGTAA
TCTTGGCAAATAAAACAACATGCATATTGGCAGAGTGGTACCAGGTAAAA
AACATATGTGTAAGCACAAGTGTAGGTTGATGGTTCCATCTTTAATATGT
ATTTGTAGTTTGCATATTATAGTCATAATAGAATCTAAACACACATATAT
ACAACTCTCAACACAGTTCCTCAACAAAGGTGCTATGAACATTCAATGAT
TTATATTTTGTGCTGTTTAATCTTTATTGTAAGTGTGGATTTGTGCACTG
TTACATGTTTAGCAGCATACTTCATCTCTACTATGTAGATCTCAGAAACC
AGCTGTGGCGATTGAAATATCCGCACTTTCTGTTCTCCTTATTCCTGTAT
TGAGAACAACCACTGAAGTTTGTACAGATAAGGGTAGCATTCGCCTTAGG
CTCTGGATTCCATGTAAAGTTTATCCCTCATCATCCTATTCAATTACATT
CATTGTGTTTTGGTGTCCAGTTTATGCTTACCAACTCCTCTTCCCAACTT
CTTGGTCAAGGCCTAATTAAATGCCTATTTTGCCTTTTTGCCTTTATTTG
AACTCCCCTTAAATGGCCACTTCCACTGAATCCTAATCCATTTTAAAACA
NCNNNNAAANNNTACANNTTNNNNCTAAATTTAATTAATTTGGTTCCCCC
CTGGCGTCTTTTTTCCCTAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_p21.g1 MSMg01no122_p21.g1 CHROMAT_FILE:
MSMg01no122_p21.g1 PHD_FILE: MSMg01no122_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:05 2005
         (534 letters)



>mm_chr19_48605085_48606018
          Length = 934

 Score =  909 bits (470), Expect = 0.0
 Identities = 518/534 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagggcacacctgctgtggtgcgcaggtagaggtcacgggcagcattggctcccttccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagggcacacctgctgtggtgcgcaggtagaggtcacgggcagcattggctcccttccg 260

                                                                       
Query: 61  gttctcttccggttctcttccggttctgaagaccgaactgaagtcctcaggatcctgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctcttccggttctcttccggttctgaagaccgaactgaagtcctcaggatcctgtag 320

                                                                       
Query: 121 caaatgctctcagttactgagccatctcttgatgttttccttgacttactttagtggttg 180
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 321 caaatgctctcagttactgagccatctcttcatgttttccttgacttgctttagtggttg 380

                                                                       
Query: 181 atgctttgttaagtgaggcttatgttaaatcctataggacaagtggagatagaaattagg 240
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 381 atgctttgttaagtgaggcttatgttaaatcctataagacaagtagagatagaaattagg 440

                                                                       
Query: 241 tttaatgcacttacactatgttgggttataaagttggcagttgtaatcttggcaaataaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tttaatgcacttacactatgttgggttagaaagttggcagttgtaatcttggcaaataaa 500

                                                                       
Query: 301 acaacatgcatattggcagagtggtaccaggtaaaaaacatatgtgtaagcacaagtgta 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 acaacatgcatactggcagagtggtaccaggtaaaaaacatatgtgtaagcacaagtata 560

                                                                       
Query: 361 ggttgatggttccatctttaatatgtatttgtagtttgcatattatagtcataatagaat 420
           |||||||||||| |||||||||| |||||||||||||| ||| | || ||||||||||||
Sbjct: 561 ggttgatggttctatctttaataggtatttgtagtttgtatactgtaatcataatagaat 620

                                                                       
Query: 421 ctaaacacacatatatacaactctcaacacagttcctcaacaaaggtgctatgaacattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 621 ctaaacacacatatatacaactctcaacacagttcctcaacaaaggtgctacgaacgttc 680

                                                                 
Query: 481 aatgatttatattttgtgctgtttaatctttattgtaagtgtggatttgtgcac 534
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgattgatattttgtgctgtttaatctttattgtaagtgtggatttgtgcac 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)