Query= MSMg01no123_c10.b1 MSMg01no123_c10.b1 CHROMAT_FILE:
MSMg01no123_c10.b1 PHD_FILE: MSMg01no123_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:29 2005
(334 letters)
>mm_chr19_19212446_19213179
Length = 734
Score = 615 bits (318), Expect = e-180
Identities = 330/334 (98%)
Strand = Plus / Minus
Query: 1 taaaaaaaacacaatgctttttatttactaccttctacaactatgaaatagaatctgaat 60
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 534 taaaaaaaacacaatgctttttatttattaccttctacaactgtgaaatagaatctgaat 475
Query: 61 taagccagtcaactttttggttatttacaataaaagtatcagttgaaactgaagtcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 taagccagtcaactttttggttatttacaataaaagtatcagttgaaactgaagtcatat 415
Query: 121 agccaactggactaggatgtccaagatgagcattcacttgctcgcctttttatgctagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agccaactggactaggatgtccaagatgagcattcacttgctcgcctttttatgctagta 355
Query: 181 tactcaggtacattgagtcattccagagttggtgactgaagtgccatcctcctaatacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tactcaggtacattgagtcattccagagttggtgactgaagtgccatcctcctaatacat 295
Query: 241 caagcctcccatgcatccttgactcagtatggtagtgcttcttaaaatagatccaacttt 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 294 caagcctcccatgcatccttgactcagtatggtagtgcttccaaaaatagatccaacttt 235
Query: 301 gcatgttgtacaacagcatgatgtcaccatctat 334
||||||||||||||||||||||||||||||||||
Sbjct: 234 gcatgttgtacaacagcatgatgtcaccatctat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_c10.g1 MSMg01no123_c10.g1 CHROMAT_FILE:
MSMg01no123_c10.g1 PHD_FILE: MSMg01no123_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:29 2005
(400 letters)
>mm_chr19_19113347_19114146
Length = 800
Score = 663 bits (343), Expect = 0.0
Identities = 386/403 (95%), Gaps = 7/403 (1%)
Strand = Plus / Plus
Query: 1 tgtttgtttttgccattagtcaaacaggtgttcaagtgattccaagaatttgaatgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttgtttttgccattagtcaaacaggtgttcaagtgattccaagaatttgaatgtagt 260
Query: 61 attaattccttatatttatttgcctctatattcctctggaggaaatgtgtcattgctttt 120
|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 261 ataaattccttatatttatttgccactagattcctctggaggaaatgtgtcattgctttt 320
Query: 121 gaataatatcagggctaagtgtcatgtgacttggcagcctggctgcctgtgttatgcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaataatatcagggctaagtgtcatgtgacttggcagcctggctgcctgtgttatgcata 380
Query: 181 gcttccttcactttagtagtgttgtgttttataaaaaaaaaaagaaaagagccgaggata 240
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gcttccttcactttagtagtgttgtgttttataaaaaaa----gaaaagagccgaggata 436
Query: 241 tgtctgatagtggtacagtgag--tcgggagggtatttttttgcgggcccatgctgagaa 298
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct: 437 tgtctgatagtggtacagtgagagtcgggagggtataactctgcgggcccatgctgagaa 496
Query: 299 tcccttccccc-tgaggtaccagacatacaacatgaccctatagtatagaatagaattta 357
||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 497 tcccttcccccctgaggtaccagacatacaataggaccctatagtatagaatagaattta 556
Query: 358 tttagagcatggaaagggaagttgagaagggaggagagagaga 400
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 tttagagcatgggaagggaagttgagaagggaggagagagaga 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
