Query= MSMg01no123_d03.b1 MSMg01no123_d03.b1 CHROMAT_FILE:
MSMg01no123_d03.b1 PHD_FILE: MSMg01no123_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:35 2005
(216 letters)
>mm_chr19_56176281_56176896
Length = 616
Score = 387 bits (200), Expect = e-112
Identities = 209/216 (96%), Gaps = 7/216 (3%)
Strand = Plus / Plus
Query: 1 ctgaattctccactcctacactgtgggttgactgacaacccttcttgccttttggctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaattctccactcctacactgtgggttgactgacaacccttcttgccttttggctctt 260
Query: 61 cttgcctcccttcaggataaaaagttgaagttctgatcttaagtaccttccggcatggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcctcccttcaggataaaaagttgaagttctgatcttaagtaccttccggcatggcc 320
Query: 121 ttgctgcaaacaatcctcaaggtctttgaggattccatagttactaattatgtctttata 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgctgcaaacaa-------ggtctttgaggattccatagttactaattatgtctttata 373
Query: 181 aaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 216
||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space: 125649
Effective search space used: 125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_d03.g1 MSMg01no123_d03.g1 CHROMAT_FILE:
MSMg01no123_d03.g1 PHD_FILE: MSMg01no123_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:35 2005
(302 letters)
>mm_chr19_56276399_56277095
Length = 697
Score = 549 bits (284), Expect = e-161
Identities = 295/302 (97%), Gaps = 7/302 (2%)
Strand = Plus / Minus
Query: 1 tgatctgtaggcatgtttgggttctgttgcttttttcctgagctgggtccaagatgttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgatctgtaggcatgtttgggttctgttgcttttttcctgagctgggtccaagatgttgc 371
Query: 61 cctagatgtgagagcctctccttggcagactttgacagagcatgctgtcagaagagtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cctagatgtgagagcctctccttggcagactttgacagagcatgctgtcagaagagtcct 311
Query: 121 aagaattaaaagagggttttcttgtgttcttttcaggaaataaatgtaaaagattcaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagaattaaaagagggttttcttgtgttcttttcaggaaataaatgtaaaagattcaaaa 251
Query: 181 ctgtgttcacacaaattttcctccactctgctgatgtccagctggggaaagatgggagag 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgtgttcacacaaattttc-----ctctgctgatgtccagctggggaaagatgggagag 196
Query: 241 gaacagagagagagagagagagagagagagagagagagagagagattgagagagagagag 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 195 gaacagagagagagagagagagagagagagagagagagagagaga--gagagagagagag 138
Query: 301 ag 302
||
Sbjct: 137 ag 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 697
Length adjustment: 9
Effective length of query: 293
Effective length of database: 688
Effective search space: 201584
Effective search space used: 201584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
