BAC Information

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BAC

Clone NameMSMg01-123N14
Chromosome19 (Build37)
Map Location 54,751,489 - 54,751,718
singlet/doubletsinglet
Overlap geneLOC100043004
Upstream geneRbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123N14.T7 (MSMg01no123_n14.b1)MSMg01-123N14.TJ (MSMg01no123_n14.g1)
ACCAG333351AG333352
length1,2481,317
length of high quality
(start - end)
258 (134 - 391)224 (181 - 404)
definitionCHROMAT_FILE: MSMg01no123_n14.b1 PHD_FILE: MSMg01no123_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:08 2005CHROMAT_FILE: MSMg01no123_n14.g1 PHD_FILE: MSMg01no123_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTCCTCTNNAATCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCACTGTCACTAAAAATCCCTTTAATCCAACAAGGAGGCACTA
AAGACACTTTATGAATACCTTAAAACCCCTCCTGGATCTTAATGCAAGAC
TTGAAATCCTGAAACTTCTAGAATAATATATAGGAACAATCTGTTACAAC
CCTAGTTTGGGGAAAGATGACCCAGATATATCACCAATAGTGTGATCAAT
AAAAATAAAGCATAATTAATTTGAACTTTATTAGAATCAGGAACTTCTAG
TCTCTGAAAGTCACTGTTGGCATGGAGAAAAACGTTGTAAAAATTTGGTG
TTTTAAAGAACATATGTCCACATTAGGTAAAGGATACTTAAATCTCAATG
ATAAGAATATTTTTATAATTAAAATAGACAAAATGTTTGAACAGCTACTT
TATCCCTAGGATTTTTTATGACCACCAGGTATACAGACAGACTCTCTATG
AAAATGGACATATAGGTCATAAAGGAAATGCTACCTGTGTCTGAAATTGC
CCCCCTTGAAAATACTGCACCAAATGTTGTCGCGCTTGCACAAAACCGAC
TAAGCCCTCCTATGAAGGGACAAATTGCTGATCCTCTCCGAACTTTCCCC
TGCCGTGCGTGCTTCTCGCCTTCCACCCATCAATACCCTCTGGATTCTCC
AATGATTTATGTACTTACTGCCTCATCGACCGACCACCCTTTACTCTCTT
TCCCCCTCTCCCCACACCCCCCTCCCCCCTCCCTTCTGTCCCTTATCCTC
TTAACCCCCTCTTAGCCTTGTTCCCATTCTTCCTCCCCCCTACCCCCTTT
CGCCCAATTCTACCTTCGCACTCTCCCTTCCCCTCCTCTTTATATCTCCT
TCCTTCTCTTCCCTTCCCTGTTCCCCTCCACTTTTTATTCTCCTCCTTTC
CTTATCCTACTCCCCTTCTCTTTCCTTTCCCTTTCCCCTTCAAATCTCTA
TTCTCCTTCTCCTCTTTCTTTCCTTTCCCTCTTTTTTATTTTCTCTTCTC
CTTTTCCTTTTTTCCCTCTTCTCTTCTCACTCTCCTTCCTCTCCCTCTCT
CACTTCCTCACCCACACCTTCTCTCCTTCTCCCCCCTCTTCTCTTTTTCT
ATCCCTTTTCTCTTCCTTCCCTCTTTTCCTTCTTTTTACTTTCTTTCTCT
CTTTCCTCTTCCTTCATTCCTCCTCCGTTTCTACTTTCTCTCCTTCTC
AATTTTCTTCCTATTGATGTTAGCCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCATAAAGCCCCCGANAGNGNNANG
GNCNCNGNGGGNANCCCTTTAAAAACCCCCCATATTCNAACGNNCANACA
CACACAAAAAAAATTGAAAACAANAAAGGCCCATTCATGTCTTTGATCCT
TTTTTATCAATTTGTATTTTTGCTGCTGAATAATTTAAGATCTGTGTAGC
TCTGCAGCTTATCAGAGGTGCAGCTTGTAGGCATATTCTCCTATATATAT
CATCTTCATAACTCATGCCTCATGATAAGAAGCTTGATATTTATCAGTAG
ATTAATTGCAATTCTCTCATTATCCCACATAAGAACATTTATCAAATCTC
ATACAATTTTTTTTTTGTTTGTCTAGCCTATGCAGTAAGACTTCATATCA
TTTTTATCATTTTTTCTTCCCCACCATAAGGCTTTGCTCCCCTTTATCAA
AATAAATATGTACAATCCATATAATTGTTTTTGTGTGCCTAATTTCTAAT
TATTGTTTCTTTTTTTTTTTTCTCATTTAACCTCTGATTTCAATACCGGA
GTGATACCTTCTCCCATGCCCTTTGATGTTTTCTGAACGCCTCCCTTTAC
CTATTACCTATAATTCTATTGATACCCTATTGCAGTCCAATCCCACTTGA
TCCAACTGTTTCACATATTGCTTCCTGACCCCTTGACTTGCATCTCTTTC
CTTTCTACAATCACCCGACCTTACACAATCACACCCTCTTCTTTTTTTCG
CTTCTCCATCGCCTCTCCCCCACCCACACCCTCTTTTTATTCTCCCACGT
TCTGTTCCCCTCCCTTTTCTTCACCCCCCCTTCCCTGCCCCCTCCCAACC
CCTCGCTCTATCCCCTGCCCCCCCTTCTCCCCCTATCTTCCCGTCCTAAC
ACTTCTCTCTAATCTCTCTCTTATCTTTTCTCCCTCCCCTTCCCATCTTG
TTTCCCTTCCCTTCTTCTTTACCTCTCTCGTATCTTCTCCTCTTTTTCCT
CTCCCTTATTCCGCCTCTCTCACTCTATCATATCCACCTCTTCTCTTCTC
TACCTCCTTCTCACCTCTCTCTATTCTATCCCTCCTCTCTTCTCTCCATA
CTCTTTCTTCCTTACTCCCCTCCATACATTCCCTATCCTCCCCGCCCCTC
TTTCTCCGCACTATTCTTTCTCTCCTGCTCCTCCTTCTATCGCGCGACCT
TCCTACTNCCCTTCTCTTCACCATCCGCTCTTCCATCTTCCTCCCTCTTT
NTCCTCTTCGTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_n14.g1 MSMg01no123_n14.g1 CHROMAT_FILE:
MSMg01no123_n14.g1 PHD_FILE: MSMg01no123_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:08 2005
         (224 letters)



>mm_chr19_54751295_54751918
          Length = 624

 Score =  379 bits (196), Expect = e-110
 Identities = 218/230 (94%), Gaps = 8/230 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   attcatgtctttgatccttttttatcaatttgtatttttgctgctgaataatttaagatc 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attcatgcctttgatccttttttatcaatttgtatttttgctgctgaataatttaagatc 254

                                                                       
Query: 63  tgtgtagctctgcagcttatcagaggtgcagcttgtaggcatattctcctatatat---- 118
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
Sbjct: 255 tgtgtagctctgcagcttatcagaggtacagcttgtaggcatattctcctatatattgcc 314

                                                                       
Query: 119 ----atcatcttcataactcatgcctcatgataagaagcttgatatttatcagtagatta 174
               ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 tctcatcatcttcataactcatgcctcatgataagaagcttgatatttatcagtaaatta 374

                                                             
Query: 175 attgcaattctctcattatcccacataagaacatttatcaaatctcatac 224
           |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attggaattctctcattatcccacataagaacatttatcaaatctcatac 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)