Query= MSMg01no123_o11.b1 MSMg01no123_o11.b1 CHROMAT_FILE:
MSMg01no123_o11.b1 PHD_FILE: MSMg01no123_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:15 2005
(329 letters)
>mm_chr19_11096684_11097412
Length = 729
Score = 561 bits (290), Expect = e-164
Identities = 316/328 (96%), Gaps = 8/328 (2%)
Strand = Plus / Minus
Query: 5 acacttttgacaccaggggcaccaatcatattcaaacttagtagagagatttgaaaatga 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acacttttgacaccaggagcaccaatcatattcaaacttagtagagagatttgaaaatga 469
Query: 65 cccttcacctttagacctgaagaattggaatgttgagtaagagtcaggcacagcccattc 124
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 468 cccttcacctttagacctgaagaattagaatgttgagtaagagtcagatacagcccattc 409
Query: 125 atttcctgtcagtctctattagactcagtccctcaactttccttttctcacatgctattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atttcctgtcagtctctattagactcagtccctcaactttccttttctcacatgctattg 349
Query: 185 tcaagtacattcttatgtctcataaagttcaatcaacaaccaggagctaatagaggctac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcaagtacattcttatgtctcataaagttcaatcaacaaccaggagctaatagaggctac 289
Query: 245 acaactgaaggtggcaataaaggtaggagaagtc----tttttaaacttcacttggataa 300
|||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 288 acaactgaaggtggcaataaaggtaggagaag-caagg---ttaaacttcacttggataa 233
Query: 301 gaggaaaataaaatggtataaaagacac 328
||||||||||||||||||||||||||||
Sbjct: 232 gaggaaaataaaatggtataaaagacac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_o11.g1 MSMg01no123_o11.g1 CHROMAT_FILE:
MSMg01no123_o11.g1 PHD_FILE: MSMg01no123_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:15 2005
(274 letters)
>mm_chr19_10935826_10936499
Length = 674
Score = 522 bits (270), Expect = e-153
Identities = 273/274 (99%)
Strand = Plus / Plus
Query: 1 gctgagcctgggaccctccagcctcggatttgttccagagtggtgtcagtcagctcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgagcctgggaccctccagcctcggatttgttccagagtggtgtcagtcagctcaatg 260
Query: 61 cgcaagggcaggagtggggcccatacagtcagctttagtgaggcccgaagtcggcgccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcaagggcaggagtggggcccatacagtcagctttagtgaggcccgaagtcggcgccac 320
Query: 121 cagaagtccaccctcacccccttggcaccccggctctcctggccagccacgaacacagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagtccaccctcacccccttggcaccccggctctcctggccagccacgaacacagca 380
Query: 181 tcacaggcctcagatacctatggcaaggcagagatgtgtggagacacaaatgataggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaggcctcagatacctatggcaaggcagagatgtgtggagacacaaatgataggcac 440
Query: 241 tgatacagcatcacctactccagctataagcagg 274
||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgatacagcgtcacctactccagctataagcagg 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
