BAC Information

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BAC

Clone NameMSMg01-124F13
Chromosome19 (Build37)
Map Location 23,479,406 - 23,479,692
singlet/doubletsinglet
Overlap geneMamdc2
Upstream geneTrpm3, EG433230, Klf9, Smc5
Downstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124F13.T7 (MSMg01no124_f13.b1)MSMg01-124F13.TJ (MSMg01no124_f13.g1)
ACCAG333723AG333724
length1,2361,297
length of high quality
(start - end)
284 (52 - 335)263 (136 - 398)
definitionCHROMAT_FILE: MSMg01no124_f13.b1 PHD_FILE: MSMg01no124_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:19 2005CHROMAT_FILE: MSMg01no124_f13.g1 PHD_FILE: MSMg01no124_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTAAAAGCAGGAAGAGGGACACACCCTTATTACACTGCACCCTTAGAGG
GAAAGCTTGTCTTCACTCCAGGATTTGGATGGAGCCTTTCCAGTCAGGGA
GGTGAAAAAGCTAATACAATCTCAGAAACATAGGATTCCCCAAAGAGACA
TATTGACGTGTTTCCCTTTGCCATGATGTGGGGAAAGAAGTCCTGAGTGT
ATTGTTGATATGAGCATGGCCATGTTAGGACACTGGTGCCTCAGATTTAT
GGGGACAGCAAAGCCTTCCCTTGCTCTGAGTCCAGATGTTCACAGTGTGT
GCAGAAAGCACCAACCAGAGCGTTAGGCTCCTATTTGACTGCAGCCTGAG
ACTGCTTCCCCCATCGCAACTTGCTAATGTGCCTTCTTCTTCCGCTGTAT
ATGATAAATGGGCTGAGTGTCTGGACATCAGAGTGCACTACCCACCTGCC
CCTATCTTTTCTGTACCCAGGTCTGATGCTTTGTCGTCCCTTCTCTTCCC
AGTCAGGTCAATCTCTCAGACTTGCAGGTCAATTGGAATTGGTGATCAGG
ATCTCAGCCTTCCCCAGCACAGGTGTTTCTAAGATGTCCAGGGCTGCCTC
TGCTGCCCCAGTTGATATCCATCCTCAAGTCAGTGTATATCAATGGCAGC
ATGTTGTCTCTATGTGGTTATATGGTTCTACTACCTCATATTGTAATGGA
AACTGTTAAATTTTCCCCCCCCTGTGTTGTTACCCTTTGGGTTTCTTTGT
CCTATAAATTCACATATTCCTTTTCCTTGGTTTTCCTTTTCCTTCTTTTA
AATTTCTCATTCTCTTCACTTTCTTTTTCTAATGTGTTTCTCAATGTTCC
TCCCCCCTTCATTCTTCTTACCCTATCTATTTTATTTTTTTTTCCCTGGG
TTTTTCCGCTGGTACTTTTTCACTATATTACTCTGCCTGACACTACGGTC
CTTTCCTCTTTCTATGCTTGGCTTTACTAAGTTCATCCTTTTCCTTAACT
ATTCTACTTATAAATCTAATTATTCTTCGTTTCTTTCTTTAATTTTTTAA
TTTTTCTTCTCCTTCTTCTTTTGCCTACCCTTTTATATTTCTCTGTGTTA
TATTTTTCTATTCTCTCTCTCTCGGGTGTGCNCTATTCTATCCTATATTT
AACTATGTATTGTTTCTATACCTCTCCTCTCGTGGATATCATAACTTCGC
GTCTTGCTCTATCTATATCTCTTCTGATTATATTTC
NTTTAACACGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTAAAGGGCTCTTNANAAATAGNATGTGGTT
ATATANACCCTTTAAGAGACCATCTATNAAAAGNTATTAGGACTAAAGTA
AAGTCAATTTTCAGAACACAAACCAGAGTTAACACATTTTATGTATGTTT
TTGTGTGTTGTATTGATGTGGGTGTGAGAGTGCCACTAGAGGTTTGTGGA
GATCGGAGAACAACTTTCTGAATTGGGTCCTTTTCTTCCATCACGGGACT
CAGGGGCTTAAACCCAGCCTTGCATAGTAAACACCTTTATCCTCTGAGCC
ATCTCGGTGGCCTTCAGCTTTACATTTGCAGAAGCACAATGAGGCAATTT
TTTTTTGAACTCAAGAAAAGAACTCCATTCAAGATTGCATCCAAAGATTA
TTTTTTTCCCCCCCCCCTGAGGAGAGCACTTGCAGAATTTCTTCTCTAAG
AACTCTAGGTGGAGACCCAGCCCGTGCTCATAGAGCAGATGACCTGCACC
ATTGTATAAAGGCAGTGCCCTTGTAATGAGTCTGCAGATTCAACAGCATT
ATCATCAGAGTCTCAGAATACTTCTTCTGCTGTAAACCATGTGGAGTTTC
AAGGCACCAAAAATATCCTCTGAAATTCTGGCAAAGGATAACGCAAGAAG
ATGCCCCCTTACTGCTTTAAAATTTACTACTTAGTGATGATTATGAAACC
CCTATGACCCTTGATCATACACTCCATGTACACTACTCTCTTTCTCCTCT
TTTCCATATGTTTTGTCGCCTTATACTTACCCCACACTCTTGCTCTTATA
CCTATATTACTACCTTCATTTGCTCACTCTCTTCTTTATAATTTCCCCCC
TTTGATTCCCCGAACTTATTTATGTATTCCATTCTACAATATCGCTCCCC
TACCCCTTCTGTTATTTATATCTCTAACCCACACTTGGCATGTCTTATGT
TTTCTCCTCCCTGTTTTTAGTATCCCTCTCGCTCCTTTTTGAATTAAATG
TCCTCTTCTTATTAATTGCTCATTGGCTCTCACTGGTGTTACCCCCTCGT
TCATTGCTAAATTCTGAACCCTTATTCCATCGTATCCTTGTATATCCTCC
TTCTATCTTGATACATACCCTTTGGTCTTCATACTTCTTCATTATTGCGT
CTAATCTCCCCTTATCCAATCTTATTCTCGCGTTCCACCATTGTTCTACT
CTTTCCNTCTCTCTGTATCATTATACTCCCTCGACTAGGATATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_f13.b1 MSMg01no124_f13.b1 CHROMAT_FILE:
MSMg01no124_f13.b1 PHD_FILE: MSMg01no124_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:19 2005
         (284 letters)



>mm_chr19_23479206_23479894
          Length = 689

 Score =  474 bits (245), Expect = e-138
 Identities = 275/287 (95%), Gaps = 5/287 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcttgtcttcactccaggatttggatggagcctttccagtcagggaggtgaaaaagc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aaagcctgtcttcactccaggatttggatggagcctttccagtcagggaggcgaaaaagc 260

                                                                       
Query: 61  taatacaatctcagaaacataggattccccaaagagacatattgacgtgtttccctttgc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 taatacaatctcagaaacataggatcccccaaagagacatattgacgtgtttccctttgc 320

                                                                       
Query: 121 catgatgtgggg-a----aagaagtcctgagtgtattgttgatatgagcatggccatgtt 175
           |||||||||||| |    |||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 321 catgatgtgggggagaggaagaagtcctgagtgtattgttgatatgagcatgaccatgtc 380

                                                                       
Query: 176 aggacactggtgcctcagatttatggggacagcaaagccttcccttgctctgagtccaga 235
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacactggtgcctcagatttacggggacagcaaagccttcccttgctctgagtccaga 440

                                                          
Query: 236 tgttcacagtgtgtgcagaaagcaccaaccagagcgttaggctccta 282
           ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tgttcacagtgtgtgcagaaagcaccaaccagagcgttaagctccta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 689
Length adjustment: 9
Effective length of query: 275
Effective length of database: 680
Effective search space:   187000
Effective search space used:   187000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)