Query= MSMg01no124_k16.b1 MSMg01no124_k16.b1 CHROMAT_FILE:
MSMg01no124_k16.b1 PHD_FILE: MSMg01no124_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:04 2005
(331 letters)
>mm_chr19_38256783_38257513
Length = 731
Score = 588 bits (304), Expect = e-172
Identities = 325/332 (97%), Gaps = 2/332 (0%)
Strand = Plus / Minus
Query: 1 gggtggaatcaaaatagccaatgtgaatggtgtccatgcgtgaaattctcaaagaactga 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 531 gggtggaatcaaaatagccaatgtgaatgatgtccatgcgtgaaattctcaaagaactga 472
Query: 61 taaaaatgctgtattaaagaatgaaggcttccctccaataaacttactaagt-aagcgtc 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 471 taaaaatgctgtattaaagaatgaaggcttccctccaataaacttactaagtaaagcgtc 412
Query: 120 aggagtcactgcaaagaggtgtcagtatcatcaaatttccttttcctaaaaaattttctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aggagtcactgcaaagaggtgtcagtatcatcaaatttccttttcctaaaaaattttctc 352
Query: 180 cttacggactcacattctcatgtgtaagacaacataacattagtcaaaatcacttctcat 239
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 351 cttatggactcacattctcatgtgtacgacaacataacattagtcaaaatcacttctcat 292
Query: 240 gtattcctggggttgcgctaatccctcattgactgcagtgctatctggctgcagcctgtg 299
||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 291 gtattcctggggttgcgctaatccctcattgactgcaatgc-agctggctgcagcctgtg 233
Query: 300 tgctgttggccagccacctacactcccagctt 331
||||||||||||||||||||||||||||||||
Sbjct: 232 tgctgttggccagccacctacactcccagctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space: 232484
Effective search space used: 232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_k16.g1 MSMg01no124_k16.g1 CHROMAT_FILE:
MSMg01no124_k16.g1 PHD_FILE: MSMg01no124_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:04 2005
(660 letters)
>mm_chr19_38119989_38121048
Length = 1060
Score = 990 bits (512), Expect = 0.0
Identities = 626/678 (92%), Gaps = 29/678 (4%)
Strand = Plus / Plus
Query: 1 agcagtggaaggtagagtgaaaatacgcccc--ccttcaggggatgatagattagataga 58
|||||||||||||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct: 194 agcagtggaaggtagagtgaaaatttgccccctcc--catgggatgatagattagataga 251
Query: 59 tgtaacaccaaattccagaaggaccagatcctacccacagcatcccagagaacacatcat 118
|||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 252 tgtaccaccaaattccagaagaaccagatcctatccacagcatcccagagaacacatcat 311
Query: 119 ttccaaagacatcaagaacacactggtagagatgtattctcatccccagaattttacttt 178
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 312 ttccaaagacatcaagaacacactggtagagatgtattctcgt-cccagaatttttcttt 370
Query: 179 tctgtaggccagggctaaagatgaagattctgtgtcttcaagtttctattggtgtgataa 238
| ||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 371 tgtgtaggccagggctaaagatggagattctgtgtcttcaagtttctattgctctgataa 430
Query: 239 agcaccatgatcaaaagcaacctgtggaggaaagggtttatttcatcttactcattatac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agcaccatgatcaaaagcaacctgtggaggaaagggtttatttcatcttactcattatac 490
Query: 299 tgagaaatctgggcagacacttgaaggcaggaactgatga--------ggaggggtgcta 350
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 491 tgagaagtctgggcagacacttgaaggcaggaactgatgagagttcatggaggggtgcta 550
Query: 351 cttactggcttgttcagctttctttttgtatcttccaggaccaccagcctagggatggta 410
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 551 cttactggcttgttcagctttctttttgtatcttccagga-------cctagggatggta 603
Query: 411 ccacagtgagctgggcccttccacgtcaatcaccaattaagaaaatg-------ttcttt 463
|||||||||||||||||||||||| |||||||||||| ||||||||| ||||||
Sbjct: 604 ccacagtgagctgggcccttccacatcaatcaccaatcaagaaaatgtcctattttcttt 663
Query: 464 gtgtgaagttgacaaaaactaccaaccattctggtacagaactgagctaataaccatgag 523
||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||
Sbjct: 664 gtgtgaagttgacaaaaaccaccaaccattctgttacagaactgggctaataaccatgag 723
Query: 524 gatgacaaaacccccagaaaaaccaatcacaggggatgctgcataaatctcatgagccat 583
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 724 gatgacaaaacccccagaaaaaccaatcacagggggtgctgcataaatctcaggagccat 783
Query: 584 atgtgaggaattatcataattagcatccaggctgtagtc-ctaggcagagaatacacaca 642
|||||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||
Sbjct: 784 atgtgaggaattatcataataagcatctgggctgtagtcgc-aggcagagaatacacaca 842
Query: 643 gagccacagcagcattcc 660
||||||||||||||||||
Sbjct: 843 gagccacagcagcattcc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
