Query= MSMg01no124_m10.b1 MSMg01no124_m10.b1 CHROMAT_FILE:
MSMg01no124_m10.b1 PHD_FILE: MSMg01no124_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:19 2005
(419 letters)
>mm_chr19_17593621_17594438
Length = 818
Score = 719 bits (372), Expect = 0.0
Identities = 396/404 (98%), Gaps = 1/404 (0%)
Strand = Plus / Plus
Query: 15 ggaattctaaggttgggactctagagaccaggctattccacccaaggtagcttccccttt 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattctaaggttgggactctagagaccaggctattccacccaaggtagcttccccttt 274
Query: 75 ccatggctgggcagaggctgtgtcctctgttgctccagcatctggcaaatgtccactcct 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccatggctgggcagaggctgtgtcctctgttgctccagcatctggcaaatgtccactcct 334
Query: 135 tcttgggtccaactcttgctttaaatgccagggtactgaatttccctaactcatgcttct 194
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 335 tcttgggtccaactcttgctttaaatgccagggtactgaatttccctcactcatgcttct 394
Query: 195 tttgagtgtgttagtatcccttgactgtgacctcaatggcagggacagtgtcctaaagag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttgagtgtgttagtatcccttgactgtgacctcaatggcagggacagtgtcctaaagag 454
Query: 255 cctttggactctgtatacatctcagagctaaatataatgcaagtatttttgaccttcttt 314
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 455 tctttggactctgcatacatctcagagctaaatataaagcaagtatttttgaccttcttt 514
Query: 315 gcgtggacgccacttactatgggttggatatgttttacagcatgtatgtgttcggaaatt 374
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 515 gcgtggactccacttactatgggttggatatgttttacagcatgtatgtgtt-ggaaact 573
Query: 375 tggtctccaaggtgataatgttgtgaagtagggtttaagatgag 418
||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 574 tggtctccaaggtgataatgttgtgaagtaggggttaagatgag 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space: 331690
Effective search space used: 331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_m10.g1 MSMg01no124_m10.g1 CHROMAT_FILE:
MSMg01no124_m10.g1 PHD_FILE: MSMg01no124_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:19 2005
(604 letters)
>mm_chr19_17734653_17735656
Length = 1004
Score = 1062 bits (549), Expect = 0.0
Identities = 591/605 (97%), Gaps = 2/605 (0%)
Strand = Plus / Minus
Query: 1 gggaccagcagtgcttgctcacaggcccctcctttccagagcactcagtgcatttctttc 60
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct: 804 gggaccagcagtgcttgctcacaggctccttctttcctgagcactcagtgcatttctttc 745
Query: 61 cccaggggaactggaaactaattgccattacaatccaagttgttcttactcagcatcctt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 744 cccaggggaactggaaactaattgccattacaatccaagttgttcctactcagcatcctt 685
Query: 121 tgatggtgtgggatggaaacaaataagaacatagcatagattaccgttgctgagtcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatggtgtgggatggaaacaaataagaacatagcatagattaccgttgctgagtcaggt 625
Query: 181 tcaactggggcccgtgcaagcagccctcgcagcaaacacgtgagacagatatttcaaatg 240
||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 624 tcaactgggtcccgtgcaggcagccctcacagcaaacacgtgagacagatatttcaaatg 565
Query: 241 tgggacttggagtggggagagctgggctggggagatggtgcatat-gcgtgtttgttgat 299
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 564 tgggacttggagtggggagagctgggctggggagatggtgcatatggc-tgtttgttgat 506
Query: 300 tttaatcttaagatgtttgactctttatctgaacaagaggattactcatcttttgctgcc 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaatcttaagatgtttgactcaagatctgaacaagaggattactcatcttttgctgcc 446
Query: 360 atttaatcaccaaacatataaacttgaactaatgacatttaaaaaaaaatacatgaagta 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttaatcaccaaacaaataaacttgaactaatgacatttaaaaaaaaatacatgaagta 386
Query: 420 gctcttctatttactgttattctaggagtaggagcagcatcaactgagagcatatgttct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctcttctatttactgttattctaggagtaggagcagcatcaactgagagcatatgttct 326
Query: 480 ttaggtgagatgtgccaacagtggcagatattataaaatggagtcttaacatgaccattt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaggtgagatgtgccaacagtggcagatattataaaatggagtcttaacatgaccattt 266
Query: 540 tctaggagacaatgatgtagcatgaaagccaagcaccttggcatagcattattcttgaaa 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaggagacaatgctgtagcatgaaagccaagcaccttggcatagcattattcttgaaa 206
Query: 600 agcag 604
|||||
Sbjct: 205 agcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
