BAC Information

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BAC

Clone NameMSMg01-125I19
Chromosome19 (Build37)
Map Location 48,755,031 - 48,755,276
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneCol17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125I19.T7 (MSMg01no125_i19.b1)MSMg01-125I19.TJ (MSMg01no125_i19.g1)
ACCAG334607AG334608
length651758
length of high quality
(start - end)
253 (54 - 306)---
definitionCHROMAT_FILE: MSMg01no125_i19.b1 PHD_FILE: MSMg01no125_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:37 2005CHROMAT_FILE: MSMg01no125_i19.g1 PHD_FILE: MSMg01no125_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTAATACACTACTATATGGAGAGGATCCGCGGAATTCTCATTGTTT
CCTATTTCCTGTCTTCATTTCCACTAGCAGGCTGATCACAACTGCTTAAG
TCATTTCTACCATGACTGAAGATTTCTCTGAAGCTCGCCTCACCTTGAGG
CTCTATTCATTGCCATCTTCTAGGATTCACTTCAGTTTCTAAAGCCCTTT
CCGTGGATATTTTGTATTTTGTATTTTGTATATTTTAGCAACAGCTCACT
TCCAGTGATAATTTATGTGTCATACTATTTCTTCTGTCGAGATAACCAAT
CTTAAATGTTTTGATTTATAAACATCGAGACCACAGTTTTCATTGTGATT
AGGTTTCCCCCCCCCCCCCAATTCAGTTTTAAGTGTTTATAAATGTTAGG
AAAGGCTTTAAAAAAAAAAAAAAAAAAAATCGGGGCGGGGGGGGCGGTCC
CCCTACCCCCCGCCTCCTATCCGCCTCCACATCGCTGCATAACGGCAATA
AGCCTTTTCCCCCCCCCTTATACTTTCTCTATAACCCCGTTCTTCCCTCC
CCCTCTCCTCTATTCTATCCATCTCTCTTCCTTCTTTCATTTCTCCCACT
TTCCCCCCAATTATCCCCCTCCCTTACTCCTCACTTCTCCCATCCTCTAC
C
TATTTCTCCTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTA
AATGGCTGAGAAGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCTTGAGATTCCACCTCACACTAGCCAGAAT
GGTTATGTTCAAAAATTCAGGTGACAGCAAATGCTACTGAGGATGTGGAG
AAAGAGCCAACACTCCTCCCTTCTTGCCGGCATTGCACGCTTGCACAACC
ACTCTGGAAATCACTTTGGTGGCTCCCTCCAAATATTCTTCTTACCACTA
CCAGAGTATCTTTCAATTCCTCTTTTGTTTTTACCCCCCCACCCCGTTCC
CACCGGTACCACGGATACATGTACCCCTTATGTTTCAACCAAAAAAAATT
TATTTTACCGGAGAGGTCTACACGCCCCCTCACGCTTTTCCCCTCACCCC
ATGCATACCTCACAATGTGTCTTATTCACCCCATGCACCCCCTATTCCGC
TATCCCACAACCCCGACCCCTCCCCACCCCCCATTCCTTCTGCCTTCCAT
TCGGCCCGATCCTCCTCCCTCCCATCAACGAATACATCCCCCTTCTCGAC
CTCCCATTCCCCGCCACTCTTCCCCCCCCTCCTATCCTCGCCGCTCCCGG
CCCTCTTTTCTATTTTACACCCGCCCCCAATCGCCCCCCGCCCACCTTCC
CCCCATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_i19.b1 MSMg01no125_i19.b1 CHROMAT_FILE:
MSMg01no125_i19.b1 PHD_FILE: MSMg01no125_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:37 2005
         (253 letters)



>mm_chr19_48754831_48755483
          Length = 653

 Score =  344 bits (178), Expect = 2e-99
 Identities = 230/260 (88%), Gaps = 21/260 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcctgtcttcatttccactagcaggctgatcacaactgcttaagtcatttctaccat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||
Sbjct: 201 atttcctgtcttcatttccactagcaggctgatcacaactgcttaaatcatttctaagat 260

                                                                       
Query: 61  gactgaagatttctctgaagctcgcctcaccttgaggctctattcattgccat------- 113
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||       
Sbjct: 261 gactgaagatttctctgaagctcgcctcaccttgaggctctgttcattgccatgtgtgct 320

                                                                       
Query: 114 cttctaggattcacttcagtttctaaagccctttccgtggatattttgtattttgtattt 173
           |||||||||||| |||||||||||||||||||||| |||||||||||||||         
Sbjct: 321 cttctaggattcccttcagtttctaaagccctttctgtggatattttgtat--------- 371

                                                                       
Query: 174 tgtatattttagcaacagctcacttccagtgataatttatgtgtcatactatttcttctg 233
                |||||||||||||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 372 -----attttagcaacagctcgcttccagtgccaatttatgtgtcatactatttcttctg 426

                               
Query: 234 tcgagataaccaatcttaaa 253
           ||||||||||||||||||||
Sbjct: 427 tcgagataaccaatcttaaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)