BAC Information

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BAC

Clone NameMSMg01-125P15
Chromosome19 (Build37)
Map Location 32,190,647 - 32,191,102
singlet/doubletsinglet
Overlap genenone
Upstream genePrkg1, 8430431K14Rik, 1810073H04Rik, Asah2, EG668042
Downstream geneSgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125P15.T7 (MSMg01no125_p15.b1)MSMg01-125P15.TJ (MSMg01no125_p15.g1)
ACCAG334919AG334920
length732730
length of high quality
(start - end)
456 (70 - 525)565 (71 - 635)
definitionCHROMAT_FILE: MSMg01no125_p15.b1 PHD_FILE: MSMg01no125_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:11 2005CHROMAT_FILE: MSMg01no125_p15.g1 PHD_FILE: MSMg01no125_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGCGCGGAATT
CTTTCTGCTTTCCCGATGGCCCACCTTCTACTCTACCCTTTCCTATAGGC
CATAGGTTTTTAATTGATAGGTGATGCATCCAAACAATACACAAAATATT
CTTTCCACACTCTGCCCTGCCCTTCCATTATCTAATGTTTCCTGCTCTGC
TATTCTGCTTTCCTCCTTCTAACCATCTATGTTCAATTCCCCATCCCTCA
CCATCCATCACTATGGCATCTTATTATGCTCCTCCTGGTACTCCAAATTA
AGCGTATACATTCAAAGCTAGAATCCATACATAAGGGAGAATATGCAGTG
TCTTTCTGGGTCTGGGTTTACTACACTTAGATTATTTCAAGCTCCATCCA
TTTCCCTGAAACTTTCCTGATTTCATTAGAGCTGAATAAAGTTCCAGTGT
GTATATGTCTCACATTTTTATGGTCCATGCATCCTTTGATGGACATCTAA
GATGCTTCCATTCCTGGCTCTTGTCAATTAGAGCAGCAAGGATCCTGGAT
GAATAGGTGCCTATGCAGTAAGATATAGAGTCCTTTGCTATATGCCCAGG
AGTGGTCTAGCTGGACCACACATGTATTTTCCAGGTTTAACAGGAACTTC
CACACTGATTTCCATAGTGTCTGCAACAGTTAGTATTCCTACCAGCACTG
AATAAATGTTCGCCTTTCCCAAAATCATGCCT
GCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACGGTTTTCTTAGTTAGGGTTTCTGTTGCTG
TAGTGAAACATCATGCTAACCCAGGCAGTGGTGGTGCACGCCTTTAATCC
CAGCACTTGGGAGGCAGAGTTAGGCAGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAAAGTGAGTTCCAGGACAGCCAAAGCTATACAGAGAAACCCTG
TCTCGAAAAAAATAAAAAAATAACAAACAAAAAATAATAAAAAAGAGACA
TCAGGGCCAAAAGCCAGTCAGGTAGGAAAGGGTTTATTTGACTTACACTT
CTAGTCCATCATTGGAGGAAGCCAGGACAGGAACTCAAGAAGGGTGGGAA
CCTAGAGGTAGGAGCTGATGCAGAGGCCATGGACAGGGTGCTGCTTACTG
GCTTACTGCTTCCAGTAGCTTGCGCAACCAGCTTTCTTATAGAACCCAGG
ACCACCAGCCTAGGAATGGCACCACCCACAGTGGGCTGGGTCCTCCCCCA
TAAAACACTAATTAAGAAATGACCTACAGTGGAATCTCATGGAAGCATTT
TCTCAATAGAGGCTCCCTTCATTCAAATAACTCTAGCTGTGTAAAGTTGG
TATAAAAGTAGCCTGCACACTGCCTTACAGTCCATTACTTCTGACTGCCT
CTGTACTGTGCTTTCATAAGACCAGACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_p15.b1 MSMg01no125_p15.b1 CHROMAT_FILE:
MSMg01no125_p15.b1 PHD_FILE: MSMg01no125_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:11 2005
         (456 letters)



>mm_chr19_32190447_32191302
          Length = 856

 Score =  835 bits (432), Expect = 0.0
 Identities = 450/456 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaccttctactctaccctttcctataggccataggtttttaattgataggtgatgcat 60
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 201 cccaccttctactctaccctttcctataggccataggttttaaattgacaggtgatgcat 260

                                                                       
Query: 61  ccaaacaatacacaaaatattctttccacactctgccctgcccttccattatctaatgtt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaacaatacacaagatattctttccacactctgccctgcccttccattatctaatgtt 320

                                                                       
Query: 121 tcctgctctgctattctgctttcctccttctaaccatctatgttcaattccccatccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgctctgctattctgctttcctccttctaaccatctatgttcaattccccatccctc 380

                                                                       
Query: 181 accatccatcactatggcatcttattatgctcctcctggtactccaaattaagcgtatac 240
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 381 accatccatcactatggcctcttactatgctcctcctggtactccaaattaagcgtataa 440

                                                                       
Query: 241 attcaaagctagaatccatacataagggagaatatgcagtgtctttctgggtctgggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaaagctagaatccatacataagggagaatatgcagtgtctttctgggtctgggttt 500

                                                                       
Query: 301 actacacttagattatttcaagctccatccatttccctgaaactttcctgatttcattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actacacttagattatttcaagctccatccatttccctgaaactttcctgatttcattag 560

                                                                       
Query: 361 agctgaataaagttccagtgtgtatatgtctcacatttttatggtccatgcatcctttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctgaataaagttccagtgtgtatatgtctcacatttttatggtccatgcatcctttga 620

                                               
Query: 421 tggacatctaagatgcttccattcctggctcttgtc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggacatctaagatgcttccattcctggctcttgtc 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)