Query= MSMg01no128_a04.b1 MSMg01no128_a04.b1 CHROMAT_FILE:
MSMg01no128_a04.b1 PHD_FILE: MSMg01no128_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:57 2005
(457 letters)
>mm_chr19_17757643_17758509
Length = 867
Score = 710 bits (367), Expect = 0.0
Identities = 440/479 (91%), Gaps = 30/479 (6%)
Strand = Plus / Plus
Query: 5 gaattcctagctgtttcttttttttt--ccaaa-gctgcttttcctcattccttccgtgc 61
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 205 gaattcctagctgtttttttttttttttccaaaagctgcttttcctcattcctttcgtgc 264
Query: 62 ttccccttttgggacccc----gagctatcaatgtatatacatgtttattacttttgtgg 117
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccccttttggga----aaatgagctatcaatgtatatacatgtttattacttttgtgg 320
Query: 118 ataacttctgagacatcacaactctctcttaatatgttgtattctgtgcagctttgccag 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ataacttctgagacatcacaactctctcttaatatgttgtattctgtacagctttgccag 380
Query: 178 ttttctattctacctctcctaatcagctacgacgaatttactgcttaatcctttcaaggt 237
|| |||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 381 ttctctattctacctttcctaatcagctacgatgaatttattgcttaatcctttcaaggt 440
Query: 238 agactcacctcaatttctatttcattttttaaaggtttttttttt-tt-----tgttctt 291
||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 441 agactcacctcaatttctatttcattttttaaaggttttttttttgttgttgttgttctt 500
Query: 292 t-aaaaaaaatctggtgagttgattgtgataatcttctcttaacatcttttgatatttca 350
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaaaaaatctggtgagttgattgtgataatcttctcttaacatcttttgatatttca 560
Query: 351 ttctgtgaatgtataaattaaatacaaggcttatgaaataaaaaagtccagccaaattac 410
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ttctgtgaatgtataaattaaatacaaggcttatgaaataaaaaagtccagtcaaattac 620
Query: 411 tatgc------------aatctttccagggtaccgttttctaaacgtaattgttgaaca 457
||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tatgcttcctactgtgcaatctttccagggtaccattttctaaacgtaattgttgaaca 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 867
Length adjustment: 10
Effective length of query: 447
Effective length of database: 857
Effective search space: 383079
Effective search space used: 383079
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_a04.g1 MSMg01no128_a04.g1 CHROMAT_FILE:
MSMg01no128_a04.g1 PHD_FILE: MSMg01no128_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:58 2005
(244 letters)
>mm_chr19_17920835_17921477
Length = 643
Score = 395 bits (204), Expect = e-114
Identities = 234/246 (95%), Gaps = 5/246 (2%)
Strand = Plus / Minus
Query: 1 agactcctccattgtttctcttaaacatggtttcatcatgagaatcatcatgagaacgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agactcctccattgtttctcttaaacatggtttcatcatgagaatcatcatgagaacgca 384
Query: 61 gggtctgagtaattatcagcactcattccactttcagtctagaaacttctgggcagtgtg 120
| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agatctgagtaattagcaacactcattccactttcagtctagaaacttctgggcagtgtg 324
Query: 121 gatttggatatccatctcaggaggcatgtgggagggggggg--agctgaggatttactgg 178
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 323 aatttggatatccatctcaggaggcatgtggga---gggggaaagctgaggatttactgg 267
Query: 179 attctgaggtgaagagagatgagagtaataggtgagaagactgccttctggcgacagatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 266 attctgaggtgaagagagatgagagtaataggtgagaagactgccttctggtgacagacg 207
Query: 239 tgggga 244
||||||
Sbjct: 206 tgggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
