BAC Information

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BAC

Clone NameMSMg01-128G08
Chromosome19 (Build37)
Map Location 10,154,131 - 10,154,564
singlet/doubletsinglet
Overlap geneFads2
Upstream geneScgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3
Downstream geneLOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G08.T7 (MSMg01no128_g08.b1)MSMg01-128G08.TJ (MSMg01no128_g08.g1)
ACCAG336677AG336678
length704737
length of high quality
(start - end)
444 (45 - 488)---
definitionCHROMAT_FILE: MSMg01no128_g08.b1 PHD_FILE: MSMg01no128_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:28 2005CHROMAT_FILE: MSMg01no128_g08.g1 PHD_FILE: MSMg01no128_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCCCATCCCACTTCTCCAATGCTGGGATGCTGGCTTTTGGAGGG
AGATTGTGGGAGGTTGCTGATCCAAATGGCAGTGGCATTTGATTATGGCG
GCTAGCATCACCATAGAAAGTCTCTCTCGGGCATTCAGGTGATCACAAGA
GAAACCCCATGTTTCCTGGGTTTCTGGTTTAACTTTGTGCAAGTGCCCCA
GAGACCATGCTGGCTGAAAGGAGCCCTGGTCTCTACTTGAAGTGACAGTC
CAGCCCATCTCGAGAGCCCCTATCATCCCAACAGGAATTGATTCCTGACA
AGGCCTTTATCTCAGTGTATATGACCAGAGCAGACCAGCCACAAGGGCAT
TTGACTCACAGAAATGTTAAGAGCAGACTTCCACCATCTGGTCATATTTA
TGATTTCTGGGAGGGCGCTCTGAGTTTGTTTTATGTGGCAGTATGCATCC
AGTTTCTTTTCGGTTTAGCAAAGTTCTCCATACAGAGTATTTTCAGTGTT
TTATGGCTTCACACCTCAGCTTTTAACCTGTTGTGGGGGTGGGGCAGTTT
TTACACGGATGTATTTAATTGGCATGTGGTCCATGTGTTCCGTTGTGGGC
CCCAGCATGAGGTCAGAGGATTACCTGCAGTAATCTGTTCTGTTCTCTGC
GTTG
TGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGATAAGAGAATTTGTCTTCCATTATGGA
TGAGTCCCTAAATGTATCCAATACCAATTGTTCAGCCCTAAAAACATATA
CACCTGAGCAACATGAAAGGAACTCAGCAGGTTATGTTTATATACTTATT
TGGATACATATGTAACAACAATAGAGAAGAGGAGCCATAATGTTGAGAGG
GATGTGGGGGGGGGCAAGAAAGGTATGAGGTAGAAATGATATATTTTAAT
CTTTTTCTTACACATTTATTTTTTAACTTATCTATTTATTATATGTAAGC
ACACTATATCTGTCTTCAGACTCTCCAGACGAGAGTATCAGATTCTGTTA
CGGATGGTTGCGAGCCACCATGTGGTTGTTTGGATTTGAACTCATGACCT
TTTGGAAGAGCATTTGGCTGCCCCTAACCGCTGAATCTTCTCATCACCCC
AATTTTAATCTTTAAAATAGAGAAGGTAATGAATAGATGACCATCTGTTT
AACCGCCTCGCCCAGTATCATCGACGACCTGAGTTTAGAATCCTCTCTGA
CCATACACACAATTGTACTCATACTGTTGTCCCCTCCCACACTCCTGCTT
CTCTCCCCACCGCCTTTATCAGCCCAACCCGGCTGTCCCTTGCTTCATTT
AACTTAATTTTTATTTTTTTTATGCTCCCTCGCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g08.b1 MSMg01no128_g08.b1 CHROMAT_FILE:
MSMg01no128_g08.b1 PHD_FILE: MSMg01no128_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:28 2005
         (444 letters)



>mm_chr19_10153919_10154764
          Length = 846

 Score =  758 bits (392), Expect = 0.0
 Identities = 423/434 (97%), Gaps = 2/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  tcccatcccacttctccaatgctgggatgctggcttttggagggagattgtgggaggttg 72
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 646 tcccatcccacttctccaatgctgggatgttggcttttggagggagattgtgggaggttg 587

                                                                       
Query: 73  ctgatccaaatggcagtggcatttgattatggcggctagcatcaccatagaaagtctctc 132
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 586 ctgatccaaatggcagtggcatttgaagatggcggctagcatcaccatagaaagtctctc 527

                                                                       
Query: 133 tcgggcattcaggtgatcacaagagaaaccccatgtttcctgggtttctggtttaacttt 192
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcgggcattcagacgatcacaagagaaaccccatgtttcctgggtttctggtttaacttt 467

                                                                       
Query: 193 gtgcaagtgccccagagaccatgctggctgaaaggagccctggtctctacttgaagtgac 252
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgcaagtgcccaagagaccatgctggctgaaaggagccctggtctctacttgaagtgac 407

                                                                       
Query: 253 agtccagcccatctc--gagagcccctatcatcccaacaggaattgattcctgacaaggc 310
           |||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 406 agtccagcccatctcaagagagccccaatcatcccaacaggaattgattcctgacaaggc 347

                                                                       
Query: 311 ctttatctcagtgtatatgaccagagcagaccagccacaagggcatttgactcacagaaa 370
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctttatctcagtgtagatgaccagagcagaccagccacaagggcatttgactcacagaaa 287

                                                                       
Query: 371 tgttaagagcagacttccaccatctggtcatatttatgatttctgggagggcgctctgag 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 286 tgttaagagcagacttccaccatctggtcatatttatgatttctgggagggcgttctgag 227

                         
Query: 431 tttgttttatgtgg 444
           ||||||||||||||
Sbjct: 226 tttgttttatgtgg 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 846
Length adjustment: 10
Effective length of query: 434
Effective length of database: 836
Effective search space:   362824
Effective search space used:   362824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)