BAC Information

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BAC

Clone NameMSMg01-129F24
Chromosome19 (Build37)
Map Location 13,547,883 - 13,548,512
singlet/doubletsinglet
Overlap genenone
Upstream geneDtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474
Downstream geneOlfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129F24.T7 (MSMg01no129_f24.b1)MSMg01-129F24.TJ (MSMg01no129_f24.g1)
ACCAG337401AG337402
length740735
length of high quality
(start - end)
629 (44 - 672)299 (72 - 370)
definitionCHROMAT_FILE: MSMg01no129_f24.b1 PHD_FILE: MSMg01no129_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:45 2005CHROMAT_FILE: MSMg01no129_f24.g1 PHD_FILE: MSMg01no129_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGAGTGATCTCCGGAGTCTGAGACTGGTTATTTCATGTGCTTAA
TGGGAAAGTTGTGAGATTACTGAACACTATGCTGTCTTCCTGTACAATGC
TGAATTTAAGTTTTGTAATTTTTAAGTAATTAATCCCATAGCTTAATTCC
TTAGCATATCCTATATCTTGAACCCTGAAACTGATTTCATAGTTAAAAAA
ATAATAGAGAAAAACAATGAGATTGATTAAAACATACAATGACACTAAAT
ATTCAGTTAGTTGGTGATTATGGAAGAATCTCTTTTGTTGAAAATGTAGC
AGAAGAATACAGCTTATTTTGCAAACTCCTTTGCCTGATGGACAGAATAT
AACTAGAAGTGATGTAAACTGATATCTATCAAAGGCTACAAAAAGGCTAC
CAAAAAAAAAACAGCTAGGAAACACATACCTGTAGGATATAATCTTTGCT
TTCTCTCAGAACACATGCATCACTACGTTCATTGCAGCCTTAGTTATAAT
AGACAGAAGCTGGAAAGAGTCCAGATGTCCCTCAACAGAGGAATGGATAC
AGAAAATGTGATACATTTACACAATTGGATACTACTCATTATTAAAAACA
ATAAATTTATGAGATTCTTGGGCAAATGGATGTATCTGGAGGATATCATC
CTGAGTGAGGTAACCCAATCACAAAAGAAGCCACTTGATA
ATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCATTACTCTTCTCTTAAGTTCTGTAT
GACATACTGCTAGGTTCTTATGGTTTTCAAAGTCTCTGGCAAGAAGTCTG
GTGTAATTCTAATAGGTCTGTCTTTATACATTACTTGACTTTTTCCCCTT
ATTGCTTTTAATGGTCTATTTTTATTTAGTGCCTTTGTTGTTCTGATTAT
TATGTGTCTGGAGAAATTTTTTTCCTGGTCCAGTCTATTTGGAGTTCTGT
AGGCTTCTTGTATGTTTATGGGCATTTCTTTCTTTCGGTTAGGGAAGATT
TCTCCTAAAATGTTGTTGAATATGTTCGCTGCACCTTTGAGTGGGGAATC
TTCACTCTCTTCTCTACCTATTATTTTCAGGTTCAGTCAGTTCATTTTAC
TTGACTTCTTGAATATTTTGAGATTGGAGTTTTTGCTTTATGTATTTTCC
TTGACTGCTGTGTTGATGTCGTCTATGGCATCTTTTACTGCTGAAATTCT
CTCTTCTATCCTTTAGAAGAGAGATTCAGTTTGTGATGCATGCATCTGTC
ATTCCTGTTCTCTTTCCTAGCTTTTCCATCTCCAGAGCTGTCTCCCATTG
NGTTTTCTTTAAAATTTCTATTTCCATTTTTAGGCCCTGGACAGTTTTGT
TCAATTCCTTCTCCTGGTTGAATTTTGCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_f24.b1 MSMg01no129_f24.b1 CHROMAT_FILE:
MSMg01no129_f24.b1 PHD_FILE: MSMg01no129_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:45 2005
         (629 letters)



>mm_chr19_13547680_13548708
          Length = 1029

 Score = 1168 bits (604), Expect = 0.0
 Identities = 622/630 (98%), Gaps = 4/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctgagtgatctccggagtctgagactggttatttcatgtgcttaatgggaa 63
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctgagtgatcactggagtctgagactggttatttcatgtgcttaatgggaa 263

                                                                       
Query: 64  agttgtgagattactgaacactatgctgtcttcctgtacaatgctgaatttaagttttgt 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttgtgagattactgaacaatatgctgtcttcctgtacaatgctgaatttaagttttgt 323

                                                                       
Query: 124 aatttttaagtaattaatcccatagcttaattccttagcatatcctatatcttgaaccct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatttttaagtaattaatcccatagcttaattccttagcatatcctatatcttgaaccct 383

                                                                       
Query: 184 gaaactgatttcatagttaaaaaaataatagagaaaaacaatgagattgattaaaacata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaactgatttcatagttaaaaaaataatagagaaaaacaatgagattgattaaaacata 443

                                                                       
Query: 244 caatgacactaaatattcagttagttggtgattatggaagaatctcttttgttgaaaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 caatgacactaaatattcagttagttggtgattatggaagaatctcttttgctgaaaatg 503

                                                                       
Query: 304 tagcagaagaatacagcttattttgcaaactcctttgcctgatggacagaatataactag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tagcagaagaatacagcttattttgcaaactcctttgcctgatggacagaatataactag 563

                                                                       
Query: 364 aagtgatgtaaactgatatctatcaaaggctacaaaaaggctaccaaaaaaaaaa----c 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 564 aagtgatgtaaactgatatctatcaaaggctacaaaaaggctaccaaaaaaaaaaaaaac 623

                                                                       
Query: 420 agctaggaaacacatacctgtaggatataatctttgctttctctcagaacacatgcatca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agctaggaaacacatacctgtaggatataatctttgctttctctcagaacacatgcatca 683

                                                                       
Query: 480 ctacgttcattgcagccttagttataatagacagaagctggaaagagtccagatgtccct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctacgttcattgcagccttagttataatagacagaagctggaaagagtccagatgtccct 743

                                                                       
Query: 540 caacagaggaatggatacagaaaatgtgatacatttacacaattggatactactcattat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caacagaggaatggatacagaaaatgtgatacatttacacaattggatactactcattat 803

                                         
Query: 600 taaaaacaataaatttatgagattcttggg 629
           ||||||||||||||||||||||||||||||
Sbjct: 804 taaaaacaataaatttatgagattcttggg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)