Query= MSMg01no130_d10.b1 MSMg01no130_d10.b1 CHROMAT_FILE:
MSMg01no130_d10.b1 PHD_FILE: MSMg01no130_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:54 2005
(287 letters)
>mm_chr19_34038841_34039528
Length = 688
Score = 505 bits (261), Expect = e-147
Identities = 281/293 (95%), Gaps = 11/293 (3%)
Strand = Plus / Minus
Query: 1 tagccatcttcagtaacaacttcatattcctcacttggatatcccca-----ttacccca 55
||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 488 tagccatcttcagtaacaacttcatattcctcacttggatatccccagtaagtt-----a 434
Query: 56 tcatctgactctgaggaggaaaattagaaag-aaaaaaaaaaccttttaagtattagttt 114
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 433 tcatctgactctgaggaggaaaattagaaagaaaaaaaaaaaccttttaagtattagttt 374
Query: 115 taaaatgcttctaacagatatttttaatgaattttagttgttcactagaagtttagaccc 174
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 taaaatgcttctaacagatatttttaatgaattttagttgttcattagaagtttagaccc 314
Query: 175 atcatgatgctaatcccagtaatactcgtcagtaactcacaacattcatgtttgcttcag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atcatgatgctaatcccagtaatactcgtcagtaactcacaacattcatgtttgcttcag 254
Query: 235 ggtttttgggacccagttttccaaataggccatgtgcacctccaaatgcagat 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggtttttgggacccagttttccaaataggccatgtgcacctccaaatgcagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_d10.g1 MSMg01no130_d10.g1 CHROMAT_FILE:
MSMg01no130_d10.g1 PHD_FILE: MSMg01no130_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:54 2005
(592 letters)
>mm_chr2_57960652_57961643
Length = 992
Score = 1075 bits (556), Expect = 0.0
Identities = 583/592 (98%)
Strand = Plus / Plus
Query: 1 cctcccttagaccagcttttctgggctctccgctgtctaaaagagcaaggttatgaccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcccttagaccagcttttctgggctctccgctgtctaaaagagcaaggttatgaccca 260
Query: 61 tttaaagaggacctgaacaacctggaagggtaccgaggagagcaccttgaaaggaccacg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaagaggacctgaaccacctggaagggtaccgaggagagcaccttgaaaggaccacg 320
Query: 121 aagactccttgattaaaaacaaagtcttcaggaaatgaaaacttctgtttcaggacaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagactccttgattaaaaacaaagtcttcaggaaatgaaaacttctgtttcaggacaact 380
Query: 181 cgattttatccatagagccacgtggtcaccagtttatctgcagtctcctgatataactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgattttatccatagagccacgtggtcaccagtttatctgcagtctcctgatataactca 440
Query: 241 agagccttattaaactcttcctggggtgtgctgctgaattgtcctggtggcatagaataa 300
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 agaaccttaagaaactcttcctggggtgtgccgctgaattgtcctggtggcatagaataa 500
Query: 301 ggtgtgtaaggagcttgcagttcattatctgcacttctgcatggcttctgctgtccgctg 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ggtgtgtaaggagcttgcagttcattatctgcacttctgcatggcttccgctgtccgctg 560
Query: 361 catggaggcgagcataagagattgccttgtgctagttcaaacagaggtcggaactcaaac 420
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catggaggcgagcgtaatagattgccttgtgctagttcaaacagaggtcggaactcaaat 620
Query: 421 atggccattcaagttcaaaagcaaggcgcctactgccaagttcatcaagcttgatgtttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggccattcaagttcaaaagcaaggcgcctactgccaagttcatcaagcttgatgtttt 680
Query: 481 ccttttccctttcagccacttgaaaagaacttttaaatgacaattcatgtaactagagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttttccctttcagccacttgaaaagaacttttaaatgacaattcatgtaactagagag 740
Query: 541 cttatgaaaagcagtaggctacattcccctggtgtctgagagaccccgtgta 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttatgaaaagcagtaggctacattcccctggtgtctgagagaccccgtgta 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
