BAC Information

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BAC

Clone NameMSMg01-130G02
Chromosome19 (Build37)
Map Location 48,780,485 - 48,780,800
singlet/doubletsinglet
Overlap geneSorcs3
Upstream gene6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130G02.T7 (MSMg01no130_g02.b1)MSMg01-130G02.TJ (MSMg01no130_g02.g1)
ACCAG338148AG338149
length7101,186
length of high quality
(start - end)
321 (44 - 364)276 (133 - 408)
definitionCHROMAT_FILE: MSMg01no130_g02.b1 PHD_FILE: MSMg01no130_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:08 2005CHROMAT_FILE: MSMg01no130_g02.g1 PHD_FILE: MSMg01no130_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATGTTACAGTCTCTCTGATCAGTCAGTTGACTTTGACAGGAATGCT
GGCCTTTCACTAGATGCAGAGGACCCCTCTGGGACTTTGGGGCAGGATGA
ATTAACCTAGAAGCTAAGACTGTCCAAAGCTCTTAGCATCTCAGTTTCTT
AGAATGGGCTTTGAGGATTGAACAATCTTGCTCATTTTCTGGGAAGTTTC
CATCTAAAGCTAAAATGAATCCATGACCCACGAGAATGCCACAAACCTTA
TCCCAAAAGCCTTAGGTGAAAAATAACTACAGAGAACTTTTCTTACCCGT
GGCAACCACAAGTTTTTTTTTTGCGCTTTCTGTCGCAGATTCTTCCAGAG
GAATATGGGTTTTCAGAGACCCGCACATGCAAGAGAAGGGAACAGAAGGG
CTAAGAGGAACAAGAAAATAGTTTAATTTCAAGAAACTCAAGCCATACCC
TTGCCCTGTATGATAAGAGGTGCTGCAGATGGGTATCATCTAGGGACAGC
AGCAGTGTGGATGCTGAACTTCAGACCCATCTGCCTGACGAATCCAGCAT
TTTATACATTACAAGTTGTCCCAAGTATCACCCTAGATCCTTCCTCCCTT
CTACTAACCTAGTATCAAATGCCCTCTTCTGCAGTCCATCTAGTCTTCCA
GGTCTAGCTC
NCCCACTCTTNNNNNAACGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAAGCACGAANGNCAG
AGNCTGCTTTCTGGNTGCTCCCTTAAGGTCAGATGCCTTCTCACACAGCC
CAGAATGCATTCTTGGACGACCCTGCACACAGTGAGCTTGGCCCTCTTAT
AACCAATTAGCAGTTAAAACCACACCTCACTGATATTCCATAGACCGACC
TGATGGAGAGAGAAAACGAGGTCCCCCTCTCCCCAGGGGTGTCTAGGCTT
TGTCAGGTTGGTAATTAAACCTAGCCAGCACACCACTTAGGGCGCCTGAT
GTGTTTTCTTAAGGAAAAAAAAAAGAGGGTTCGGTAAAATAATGAAAAAA
ACAACAACTTTTTCAGCAGTGACTCACACTATTCCTGGGGAAATGGGAAC
AAACATCTATTTATTCCACATCCCGAACCAACGATGGACCAAAGTCACAG
AACTGCCACTGACCACCGTGATGACCCAGAGTTCACTGTGGTTCCTAGCA
GAAATACAGATGAAGACTTTGATGCGGAAGCATGGGCAACCCAGCTGCAT
CACTGCAAAGCCCACCTTTACTGCATCTGTAATTTTGGGATACTATGCAT
CTAGTCAGTTTCAGGGGCTTCCTGGGACTTTGGAGTTGTTTCTTTCTTGA
GTTTTCTGAAGCTTCCCTTCAGAAGATAACGTTCCAGTTCAGGGAGATTG
CTACACGGTACTCAGATAGTCAATAATGCTTCTTCCCCTACATGGTAGAC
ATTTAATCATAACTGATTTATGACTATGAGAGATGGTTGCAGCTGCAAGG
GCACCATGAAGTTTATCATACTTTTTAGTATGATAGCCTTTTAGCCTTCT
CTCTATTTTTTCTGCCTGCTTCTTCATAAACTTGCCCTATATGNATATAT
ATATATTATATATATATGGAAAATGGGCACCCCACGCGGCTTCCCCAAAT
TAAATCTGTTAACTACAACCTTACCCCTAAATTTCAGGTTTTTGGGTGGA
ACCACGGAATTTGGGAAACCCCCCGTTCCCTAAACCTTTTGTTTTCCGGT
TCAGGGGAACCCCTTTTTTTTCTCCCCCCCACCTTTTAACCGGGGGTTTG
AACAAAACAGCTGGGAAGAAAAAAACCGGCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_g02.b1 MSMg01no130_g02.b1 CHROMAT_FILE:
MSMg01no130_g02.b1 PHD_FILE: MSMg01no130_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:08 2005
         (321 letters)



>mm_chr19_48780281_48781001
          Length = 721

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatgttacagtctctctgatcagtcagttgactttgacaggaatgctggccttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattccatgttacagtctctctgatcagtcagttgactttgacaggaatgctggccttt 461

                                                                       
Query: 65  cactagatgcagaggacccctctgggactttggggcaggatgaattaacctagaagctaa 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 460 cactagatgcagaggacccctctgggactttgggacaggatgaattaacctagaagctaa 401

                                                                       
Query: 125 gactgtccaaagctcttagcatctcagtttcttagaatgggctttgaggattgaacaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gactgtccaaagctcttagcatctcagtttcttagaatgggctttgaggattgaacaatc 341

                                                                       
Query: 185 ttgctcattttctgggaagtttccatctaaagctaaaatgaatccatgacccacgagaat 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 340 ttgctcattttctgggaagtttccatctaaagctcaaatgaatccatgacccacgagaat 281

                                                                       
Query: 245 gccacaaaccttatcccaaaagccttaggtgaaaaataactacagagaacttttcttacc 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 280 gccacaaaccttatcccaaaagccttaggtgaaaaacaactacagagaacttttcttacc 221

                           
Query: 305 cgtggcaaccacaagt 320
           ||||||||||||||||
Sbjct: 220 cgtggcaaccacaagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)