BAC Information

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BAC

Clone NameMSMg01-130I13
Chromosome19 (Build37)
Map Location 59,530,272 - 59,530,498
singlet/doubletsinglet
Overlap geneEmx2os
Upstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
Downstream geneEmx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I13.T7 (MSMg01no130_i13.b1)MSMg01-130I13.TJ (MSMg01no130_i13.g1)
ACCAG338263AG338264
length716745
length of high quality
(start - end)
229 (72 - 300)---
definitionCHROMAT_FILE: MSMg01no130_i13.b1 PHD_FILE: MSMg01no130_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:22 2005CHROMAT_FILE: MSMg01no130_i13.g1 PHD_FILE: MSMg01no130_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAAATTTGCGGCGCTATACGACTCCTATATTCCGAAATGCGCGGAATT
CTGCTAGGTTTCCATGAGCTCTGGGTCTCAAGCTGGACTTGAATGCCCGG
AGCCCTGGTGCGCCTCTGCTGCTCAGTGTGGTTAATAAGTTACTCTCTAG
CTAATTCCTCTACACGCTGAGGAGACCAGATTCTTCCGGGGCACCTCTGG
GCTGGGAGCATGAATTAGCATAGACTATTTGGCCTCTATGGTTTCTGCAC
CCAGTCTGACTCACCGGAAACCCGCTTTTCTTCTTCAGTGGAGGTTGATC
GAGAAGGGGCAGAGCCTCCTTGGTTTCATGTACTTGACTGCCTAATGCTC
CTGCTGTTCCTGATTCTTGGCTACTTGTACGGCACTTTGACATCATCTCG
TCTCGGTCATCTACCGTCAGAAGGTATTTTTGCAATAGGCTGGTGGCTTG
CTGAGGATCATGATTCTGGTGACACGCCCTTGTCTCATGCATGATACTGC
TCGCTCTTGTTCGAATTTACGCGCTCATTCCCCTCAGACTTCTCCTCAGC
ACACTTTGTTTTACACAGCCGAGGGATCACGTATATTCCACCCCCCCTTG
TGCACCTTCTTTCCCAATCTTCTCAACAGGCCTTGGCTTTCTTCGCCTGC
TTACACGCGATTGTCCGTGTTTACCCATATTTCTTGTTTATTTCCTGCCA
CCTGATGCCCATGCCC
AATGCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATACTGAGTAATCTTTGGTAAGTCACCAGTA
TTCCTGATATCCAGTTTCTTCCCCTATAAAATGAAGGCAATTACCTGACT
GTTGATTAACGGGCCTTCTACAACAGTCCTATCTGATTCTGTGGCTCTAT
TTCAGATTACTGACCGATATTTACTCGATAGACAATAGCTATTATAGATA
ACAAATTTAAGATGATTTATAACTCTACGACACATATGGTCTAACATTAT
ATCATTGATGATATTCCGGTGCTATTTTTTTCTCATACTTACATTCCTTC
GACAGACAAATATTTTTTTTTTTCTCTCCCCCCCCCTTATACATTTCTTT
TTCACACTTTCTCCTTTTCCCCCCCCCTCCTATAATACTAATATCTCCCT
GTGCGGGCCCGCTTCCTTCCATTTCCTTCATCTTTCTTTCTTACTTCCCT
TTTCCTCCCCTTCACCCCCTTTCCACAAATTTCCCCTCTCACATTTTATT
ATTTCTATTATTTTTCCCATTCTTACTATTCTTTTATTTTCCACCCTATC
CCTTTCATTCCTTTCCTTATTCCACCTTCCCCAACTTATCTCTTCCTTTC
CCCTCCCATCAACCTCCCCAATCTCTTTTTAATTTTTCTTCTTGCCCAAA
CCTTTTTCCCCTTATTTTCCCCCCTCCCACTCCTTCCCCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i13.b1 MSMg01no130_i13.b1 CHROMAT_FILE:
MSMg01no130_i13.b1 PHD_FILE: MSMg01no130_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:22 2005
         (229 letters)



>mm_chr19_59530072_59530700
          Length = 629

 Score =  393 bits (203), Expect = e-114
 Identities = 221/227 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtctcaagctggacttgaatgcccggagccctggtgcgcctctgctgctcagtgtgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgggtctcaagctggacttgaatgcccggagccctggtgcgcctctgctggtcagtgtgg 260

                                                                       
Query: 61  ttaataagttactctctagctaattcctctacacgctgaggagaccagattcttccgggg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaataagttactctctagttaattcctctacacgctgaggagaccagattcttccgggg 320

                                                                       
Query: 121 cacctctgggctgggagcatgaattagcatagactatttggcctctatggtttctgcacc 180
           ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 321 cacctctgggctgggagcatgaattagcatagattatttggcatctatggcttctgcacc 380

                                                          
Query: 181 cagtctgactcaccggaaacccgcttttcttcttcagtggaggttga 227
           ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcctgactcaccggaaacccgcttttcttcttcagtggaggttga 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)