Query= MSMg01no130_l15.b1 MSMg01no130_l15.b1 CHROMAT_FILE:
MSMg01no130_l15.b1 PHD_FILE: MSMg01no130_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:40 2005
(392 letters)
>mm_chr19_52337284_52338075
Length = 792
Score = 727 bits (376), Expect = 0.0
Identities = 388/392 (98%)
Strand = Plus / Minus
Query: 1 ggacctttgtggggctgctcaatctctcctgttctcagtcattggctgcaacctcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggacctttgtggggctgctcaatctctcctgttctcagtcattggctgcaacctcaaata 533
Query: 61 tataattctatcccagcagaacagaacttttagaaacaggttctgacaccatgtgtataa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 532 tataattctatcccagcagaacagaacttttagaaacaggttctgacaccatatgtataa 473
Query: 121 attatcttgctatttagaaattgcaccttccgttctaattagagtaacaagattctcctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 472 attatcttgctatttagaaattgcaccttccgttctaattagagtaacaagattcttttt 413
Query: 181 tgaacaatatgtggcactctgtttattaattcaaaaccgaccttatgattccagtgaggt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 412 tgaacaatatgtggcactctgtttattaattcaaaaccgaccctatgattccagtgaggt 353
Query: 241 tagtgtcttcactcagctaatcaccatgtggcagtttaggagaggaacctagagagctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tagtgtcttcactcagctaatcaccatgtggcagtttaggagaggaacctagagagctga 293
Query: 301 gaacagagaaggaacataagactgaaggataggctaagatgtttggatttaatcaagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaacagagaaggaacataagactgaaggataggctaagatgtttggatttaatcaagagt 233
Query: 361 aaagaaaccaagatactgtaacatataggctt 392
||||||||||||||||||||||||||||||||
Sbjct: 232 aaagaaaccaagatactgtaacatataggctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_l15.g1 MSMg01no130_l15.g1 CHROMAT_FILE:
MSMg01no130_l15.g1 PHD_FILE: MSMg01no130_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:40 2005
(293 letters)
>mm_chr19_52177445_52178138
Length = 694
Score = 464 bits (240), Expect = e-135
Identities = 279/294 (94%), Gaps = 5/294 (1%)
Strand = Plus / Plus
Query: 1 agtaagaatgttacctattcagacgaattgcctaccagtattgaccgagagatggtgtaa 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 agtaagaatgttacctattcagacgaattgcctaccagtattgaaagagagatggtgtag 264
Query: 61 gaaatcaggcattactatctactacaaagagttagagatttcagggcaagcttagcaaag 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 gaaatcaggcattactatctactacaaagagttagaaatttcagggcaagcttagcaaag 324
Query: 121 taagtttagaattctttttttttttttttttgatccaaagtttatttttaaaacaaatac 180
|||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 325 taagtttaaaattcttttttttttttt----gatccaaattttatttttaaaacaaatac 380
Query: 181 aaaacaccaaaggcttaactaatgacttgttaacattgattagggaagggcatagaatta 240
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 381 aaaacaccaaaggcttagctaatgacttgctaacattgattagggaagggtatagaatta 440
Query: 241 tggatgctgcttatttcttctgaaggcttttaattttt-gttcactttttataa 293
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 441 tggatgctgcttatttcttctgaaggtttttaattttttgttcactttttataa 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space: 194540
Effective search space used: 194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
