BAC Information

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BAC

Clone NameMSMg01-131M01
Chromosome19 (Build37)
Map Location 26,690,673 - 26,690,896
singlet/doubletsinglet
Overlap geneSmarca2
Upstream geneDmrt3, Dmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131M01.T7 (MSMg01no131_m01.b1)MSMg01-131M01.TJ (MSMg01no131_m01.g1)
ACCAG339172AG339173
length710708
length of high quality
(start - end)
544 (68 - 611)224 (126 - 349)
definitionCHROMAT_FILE: MSMg01no131_m01.b1 PHD_FILE: MSMg01no131_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:05 2005CHROMAT_FILE: MSMg01no131_m01.g1 PHD_FILE: MSMg01no131_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTTGCGGCGCTAAAGACTCCTATTCAGAAAGGAGCGCGGAATC
TTTGTTTCCTCAGAGCCCATTTTTTAAAGGGGTTATTTGATTTTCTGAAG
TCCACCTTCTTGAGCTCTTTATATATGTTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGATCCTTGATCCACTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACACGATAACAACCAGTTGTGACAGCATAATTTGCTAAACACATGAAACT
CAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCTTCCTTAGATTTG
GGAACAAAACACCCATGGAAGGAATTACAGAGACAAAGTTTGGAGCTGAG
ATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCAT
AATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATT
GAAAGGACAA
CGATGATACGGTAGGCTGGCGGCGCCTGTTCCCGACATTAGGTGACCTAT
AGAATTTCCGCGAAATTCTTGCCAGAACACAGTGGCCTGGCCCTTTGGGA
GTCCTGGTTTGACCGAACAGAAATGTGGCAGGGAGGGAAATGGGGCTGCA
TTGCGAGTGTCTGGGTGGCAGCTGGGCTCTTGCCCAGGCAGATTTCCTTC
AGTGAGTTTCATCACTTGGACAATCCTATCATCTGGGATTATTAGCCCTG
CACCTCTCCCATTGTGTTCCTGGGACCATCTCCTTATCTATCCCACCTGG
TGCTTTGAAGAAAGATGAAAGTGGCAAGGATTTGAATGGACACAAGGAGA
GATTTTATTTGCCTCACCTACACTTGAAGCCCTTATTGCTGACTCAGTAA
TAACATGCTCCCTGACATGAGATTTGCATCTCGGATTTGTAGCTCTAAGG
GTCTTTATAATAACAATATAGGATCGTGCCATGGTGCATTTGAGCTAAAG
AGTAAAGTTGCCACCAGAAATGTAGAGGAAGAATAAGAGTGGACCTTCTG
GCTTCAACTCTTCTTCCTGTGAGTGCTTGAGAGATGGACAGTCCTGGCTT
TGGCATAATAGCCTATTCAGGAACTCGAGCAAGCCCAGGGCAGGAATGGG
GTCTTGGAGAGTCTCTGGATGATGATAGACCCTATGTCTTACGTAGATAG
ATGGACGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_m01.g1 MSMg01no131_m01.g1 CHROMAT_FILE:
MSMg01no131_m01.g1 PHD_FILE: MSMg01no131_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:05 2005
         (224 letters)



>mm_chr19_26690473_26691096
          Length = 624

 Score =  426 bits (220), Expect = e-124
 Identities = 223/224 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcagggagggaaatggggctgcattgcgagtgtctgggtggcagctgggctcttgccc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tggcagggagggaaatggggctgcattgcgcgtgtctgggtggcagctgggctcttgccc 260

                                                                       
Query: 61  aggcagatttccttcagtgagtttcatcacttggacaatcctatcatctgggattattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcagatttccttcagtgagtttcatcacttggacaatcctatcatctgggattattag 320

                                                                       
Query: 121 ccctgcacctctcccattgtgttcctgggaccatctccttatctatcccacctggtgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgcacctctcccattgtgttcctgggaccatctccttatctatcccacctggtgctt 380

                                                       
Query: 181 tgaagaaagatgaaagtggcaaggatttgaatggacacaaggag 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagaaagatgaaagtggcaaggatttgaatggacacaaggag 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)