Query= MSMg01no132_b24.b1 MSMg01no132_b24.b1 CHROMAT_FILE:
MSMg01no132_b24.b1 PHD_FILE: MSMg01no132_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:33 2005
(234 letters)
>mm_chr19_24596015_24596650
Length = 636
Score = 439 bits (227), Expect = e-128
Identities = 233/235 (99%), Gaps = 2/235 (0%)
Strand = Plus / Minus
Query: 1 cgcacattttgctttg-tttttttc-gctttgaatcgcagtcaaagatcactttattttg 58
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 435 cgcacattttgctttgttttttttctgctttgaatcgcagtcaaagatcactttattttg 376
Query: 59 tagctcaactcacccctgcctccgatccttttcttcctctttctgaccttcctgtatccc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tagctcaactcacccctgcctccgatccttttcttcctctttctgaccttcctgtatccc 316
Query: 119 ttagcatcccttggtttcaaggggctcatctgtttgtatctcccaggacactgcgtgctc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttagcatcccttggtttcaaggggctcatctgtttgtatctcccaggacactgcgtgctc 256
Query: 179 ctgtctcatctctgaccctttggagtgtataagaatgacaaaaaaaaaaaaaaaa 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgtctcatctctgaccctttggagtgtataagaatgacaaaaaaaaaaaaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 636
Length adjustment: 9
Effective length of query: 225
Effective length of database: 627
Effective search space: 141075
Effective search space used: 141075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no132_b24.g1 MSMg01no132_b24.g1 CHROMAT_FILE:
MSMg01no132_b24.g1 PHD_FILE: MSMg01no132_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:33 2005
(472 letters)
>mm_chr19_24448606_24449478
Length = 873
Score = 861 bits (445), Expect = 0.0
Identities = 466/475 (98%), Gaps = 5/475 (1%)
Strand = Plus / Plus
Query: 1 ctcatatccttcagtatcaagctgtgacatcacctactccaatcctcaccca---cgcaa 57
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 201 ctcatatccttcagtatcaagctgtgacatcacctactccaatcctcac--aatacgcaa 258
Query: 58 tcatcaccgcatctctcggactgcttggcaatggatcaaacatggaggccactcacccca 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcatcaccgcatctctcggactgcttggcaatggatcaaacatggaggccactcacccca 318
Query: 118 ggctcagcaacaaggacctgtcccagtatgagcccagttcacctctctcctgctgaagtg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggctcagcaacaaggacctgtcccagtatgagcccagttcacctctctcctgctgaagtg 378
Query: 178 ccgccataataatgctctgtgacgggctgctttctggagcctcagatggacagcagggtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccgccataataatgctctgtgacgggctgctttctggagcctcagatggacagcagggtt 438
Query: 238 tcaacagaagagatccctagttgttaggtaccagcattggcctcggagtgaccctgcagc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaacagaagagatccctagttgttaggtaccagcattggcctcggagtgaccctgcagc 498
Query: 298 caccccctagagcccaatacccatcagccatactaaagttcaattctgaggagcggagaa 357
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 499 caccccctagatcccaatacccagcagccatactaaagttcaattctgagaagcggagaa 558
Query: 358 gatacagaaaaggaaaggcataaagagcctggaccaaaatataaaaataagttaaaaaca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatacagaaaaggaaaggcataaagagcctggaccaaaatataaaaataagttaaaaaca 618
Query: 418 accaaccaactaaccaaccaaccaaccaaccaaccaaccaaacaaacaaacaaac 472
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 accaaccaactaaccaaccaaccaaccaaccaaccaaccaaccaaacaaacaaac 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space: 398706
Effective search space used: 398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|