BAC Information

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BAC

Clone NameMSMg01-132B24
Chromosome19 (Build37)
Map Location 24,448,806 - 24,596,449
singlet/doubletdoublet
Overlap genePip5k1b, 2900009I07Rik
Upstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457
Downstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132B24.T7 (MSMg01no132_b24.b1)MSMg01-132B24.TJ (MSMg01no132_b24.g1)
ACCAG339447AG339448
length702686
length of high quality
(start - end)
234 (128 - 361)472 (72 - 543)
definitionCHROMAT_FILE: MSMg01no132_b24.b1 PHD_FILE: MSMg01no132_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:33 2005CHROMAT_FILE: MSMg01no132_b24.g1 PHD_FILE: MSMg01no132_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,596,215 - 24,596,449)(24,448,806 - 24,449,278)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAA
TTCTTCTGCAGTTACCAAGAGACTGCTCTTTGTTTCATTCAGTTACTTGG
ATCATTAGTAACTTGGTATTTTCCTTACGCACATTTTGCTTTGTTTTTTT
CGCTTTGAATCGCAGTCAAAGATCACTTTATTTTGTAGCTCAACTCACCC
CTGCCTCCGATCCTTTTCTTCCTCTTTCTGACCTTCCTGTATCCCTTAGC
ATCCCTTGGTTTCAAGGGGCTCATCTGTTTGTATCTCCCAGGACACTGCG
TGCTCCTGTCTCATCTCTGACCCTTTGGAGTGTATAAGAATGACAAAAAA
AAAAAAAAAATTTTTTTCTCCCCCCCCCCCCGACGAGATGTATTGCCAGG
GTGGGTCTGAAAAGCATCAGAAGGAATAAAGAAAACCTTAGAGTGTTTCA
GGGATCTGGGACCAAGGAGAAATGAGAATGTCTGAGACTCTTGATTGCAT
AAGTATGATGAGACTTGGGAGGGGGGGGCGCTGGTGATTAATTGAAATTT
TAAAAAGTCATGCACAGAAAATGGAGAAACGCTATAGTCAGAGTTGAGAC
TTCCAAAATTATCACCATCCCAAGTTACTGACTGACTGACTGACTCCTGG
TCCTTGAAAAGCCTAACAAGGGGCATCAATGTGGAGTTTTATGGCTCATC
CA
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCATATCCTTCAGTATCAAGCTGTGACA
TCACCTACTCCAATCCTCACCCACGCAATCATCACCGCATCTCTCGGACT
GCTTGGCAATGGATCAAACATGGAGGCCACTCACCCCAGGCTCAGCAACA
AGGACCTGTCCCAGTATGAGCCCAGTTCACCTCTCTCCTGCTGAAGTGCC
GCCATAATAATGCTCTGTGACGGGCTGCTTTCTGGAGCCTCAGATGGACA
GCAGGGTTTCAACAGAAGAGATCCCTAGTTGTTAGGTACCAGCATTGGCC
TCGGAGTGACCCTGCAGCCACCCCCTAGAGCCCAATACCCATCAGCCATA
CTAAAGTTCAATTCTGAGGAGCGGAGAAGATACAGAAAAGGAAAGGCATA
AAGAGCCTGGACCAAAATATAAAAATAAGTTAAAAACAACCAACCAACTA
ACCAACCAACCAACCAACCAACCAACCAAACAAACAAACAAACAAACAAA
CAAACAAACAAACAAAAAACCCCAACACACTCTTGTCTAAATTAAATAAA
AAGGTACTATTAAGTAAAGCTAAAGGGTAAATATTAAACACAATGCCCAA
TTATCATATGATACAAACCTAGATATCAGGGTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_b24.b1 MSMg01no132_b24.b1 CHROMAT_FILE:
MSMg01no132_b24.b1 PHD_FILE: MSMg01no132_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:33 2005
         (234 letters)



>mm_chr19_24596015_24596650
          Length = 636

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%), Gaps = 2/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcacattttgctttg-tttttttc-gctttgaatcgcagtcaaagatcactttattttg 58
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 435 cgcacattttgctttgttttttttctgctttgaatcgcagtcaaagatcactttattttg 376

                                                                       
Query: 59  tagctcaactcacccctgcctccgatccttttcttcctctttctgaccttcctgtatccc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tagctcaactcacccctgcctccgatccttttcttcctctttctgaccttcctgtatccc 316

                                                                       
Query: 119 ttagcatcccttggtttcaaggggctcatctgtttgtatctcccaggacactgcgtgctc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttagcatcccttggtttcaaggggctcatctgtttgtatctcccaggacactgcgtgctc 256

                                                                  
Query: 179 ctgtctcatctctgaccctttggagtgtataagaatgacaaaaaaaaaaaaaaaa 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgtctcatctctgaccctttggagtgtataagaatgacaaaaaaaaaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 636
Length adjustment: 9
Effective length of query: 225
Effective length of database: 627
Effective search space:   141075
Effective search space used:   141075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no132_b24.g1 MSMg01no132_b24.g1 CHROMAT_FILE:
MSMg01no132_b24.g1 PHD_FILE: MSMg01no132_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:33 2005
         (472 letters)



>mm_chr19_24448606_24449478
          Length = 873

 Score =  861 bits (445), Expect = 0.0
 Identities = 466/475 (98%), Gaps = 5/475 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatatccttcagtatcaagctgtgacatcacctactccaatcctcaccca---cgcaa 57
           |||||||||||||||||||||||||||||||||||||||||||||||||  |   |||||
Sbjct: 201 ctcatatccttcagtatcaagctgtgacatcacctactccaatcctcac--aatacgcaa 258

                                                                       
Query: 58  tcatcaccgcatctctcggactgcttggcaatggatcaaacatggaggccactcacccca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcatcaccgcatctctcggactgcttggcaatggatcaaacatggaggccactcacccca 318

                                                                       
Query: 118 ggctcagcaacaaggacctgtcccagtatgagcccagttcacctctctcctgctgaagtg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggctcagcaacaaggacctgtcccagtatgagcccagttcacctctctcctgctgaagtg 378

                                                                       
Query: 178 ccgccataataatgctctgtgacgggctgctttctggagcctcagatggacagcagggtt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccgccataataatgctctgtgacgggctgctttctggagcctcagatggacagcagggtt 438

                                                                       
Query: 238 tcaacagaagagatccctagttgttaggtaccagcattggcctcggagtgaccctgcagc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcaacagaagagatccctagttgttaggtaccagcattggcctcggagtgaccctgcagc 498

                                                                       
Query: 298 caccccctagagcccaatacccatcagccatactaaagttcaattctgaggagcggagaa 357
           ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 499 caccccctagatcccaatacccagcagccatactaaagttcaattctgagaagcggagaa 558

                                                                       
Query: 358 gatacagaaaaggaaaggcataaagagcctggaccaaaatataaaaataagttaaaaaca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gatacagaaaaggaaaggcataaagagcctggaccaaaatataaaaataagttaaaaaca 618

                                                                  
Query: 418 accaaccaactaaccaaccaaccaaccaaccaaccaaccaaacaaacaaacaaac 472
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 619 accaaccaactaaccaaccaaccaaccaaccaaccaaccaaccaaacaaacaaac 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)