Query= MSMg01no133_d17.b1 MSMg01no133_d17.b1 CHROMAT_FILE:
MSMg01no133_d17.b1 PHD_FILE: MSMg01no133_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:00 2005
(478 letters)
>mm_chr19_55933757_55934634
Length = 878
Score = 862 bits (446), Expect = 0.0
Identities = 470/478 (98%), Gaps = 2/478 (0%)
Strand = Plus / Plus
Query: 1 ccatcttatggtttatcgacaccttcatctgtgaacagaagagccctacccatactagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcttatggtttatcgacaccttcatctgtgaacagaagagccctacccatactagcg 260
Query: 61 aaggcagtgcactttacccagaaccacctaggactttcataaatctcgtctcattttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 261 aaggcagtgcactttacccagaaccacctaggactttcataaatctcgttttattttttc 320
Query: 121 ttatgtcagggattgaaactgaggccttgaacacattagacatccattgagctacatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgtcagggattgaaactgaggccttgaacacattagacatccattgagctacatctc 380
Query: 181 cagccaagaataatgtttgagcaaatatctggacgccttgtagtcctgtcaaacaaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagccaagaataatgtttgagcaaatatctggacgccttgtagtcctgtcaaacaaacat 440
Query: 241 gtaaatactgactaaaggcacagaaccaacagaaggtacatgtagttatatagatgcgaa 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gtaaa-actgactaaaggcacagaaccaacagaaggtacatgtagttatatagacgcgaa 499
Query: 301 agaggatttgtacatggagttggctttcacagtcctgaaggtgagcgcttttgtggagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaggatttgtacatggagttggctttcacagtcctgaaggtgagcgcttttgtggagcc 559
Query: 361 agaagtaaagtgcaagccccattcttgcagcgtggtgtatggattcagattctcgcagta 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 agaagtaaagtgcaagccccattcttgcagcgtggtggatggattcagattctcgcagta 619
Query: 421 ttgaacagctgtcagcccgtttcactctgatattattttatgcaaaatgttttctgaa 478
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 620 gtgaacagctgtcagccagtttcactctgatattattttatgcaaaatgttt-ctgaa 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_d17.g1 MSMg01no133_d17.g1 CHROMAT_FILE:
MSMg01no133_d17.g1 PHD_FILE: MSMg01no133_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:00 2005
(187 letters)
>mm_chr19_56066252_56066837
Length = 586
Score = 323 bits (167), Expect = 4e-93
Identities = 182/187 (97%), Gaps = 1/187 (0%)
Strand = Plus / Minus
Query: 1 acagcgggtacttggctgcattattccgtcctagggtcccattttctcctgtcaagaggc 60
|||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 386 acagcgggcacttggctgcattattctgtcctagggttccattttctcctgtcaagaggc 327
Query: 61 tttgactgaagtcacaattgtcttccagtgaaaggttgaaatgccacgtggatgacttga 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 326 tttgactgaagtcacaattgtcttccagtgaaaggctgaaatgccacgtggatgacttga 267
Query: 121 gtgatgggtcctaacatcttggctgctcaagaaaaaaaccatgctaatggatttatgcac 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 266 gtgatgggtcctaacatcttggctgctcaagaaaaaaa-catgctaatggatttatgcac 208
Query: 181 tgagtaa 187
|||||||
Sbjct: 207 tgagtaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 586
Length adjustment: 8
Effective length of query: 179
Effective length of database: 578
Effective search space: 103462
Effective search space used: 103462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
