BAC Information

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BAC

Clone NameMSMg01-134D22
Chromosome19 (Build37)
Map Location 10,807,527 - 10,807,718
singlet/doubletsinglet
Overlap geneCd5
Upstream gene6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c
Downstream geneCd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134D22.T7 (MSMg01no134_d22.b1)MSMg01-134D22.TJ (MSMg01no134_d22.g1)
ACCAG341006AG341007
length1,1011,110
length of high quality
(start - end)
192 (210 - 401)45 (499 - 543)
definitionCHROMAT_FILE: MSMg01no134_d22.b1 PHD_FILE: MSMg01no134_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:27 2005CHROMAT_FILE: MSMg01no134_d22.g1 PHD_FILE: MSMg01no134_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTATTTNNNAAAACTATGGGCGCTATAGACTACTATAGGGAGAGGATCC
GCGGAATTCTTAGATGGTATNNACCCAATAGAATCTCCGGAAANGGNGNA
ANANNNNNANANNNCCTTTTAAAATCTCCTCCAGGGCCCCCAAGNAGAGN
CCGGGGNGGGGAGNCNCAGAAAGNACGGGGNACGGGTTTTATGAGGCTCC
TCAGGAGGNCAGGGAGATGCTGAGCACAGCCTGTAGGGCCCAGGGCTAGG
AGGGAGTTCCTGGGTATCTGTGAGAAGAGACAAAATGAATGAAGGTAGGT
GGTGGACAAAGAAAGCCTGACAGTATCCTCATATTAGCCAAGAGGCAGGA
TGCCATTAGTCTTCCTCTGCCAGACACTAGGACTCATTAAGAACATGGCT
TTTTTTTTTTGCATGNNNAGGCCAAGACAAAGGTGAAGGATCATGAAACT
GATTTTTTTTTTTTTACAGACCAGACAGGGGGAACAAGTTGAAAAAAAAA
CACAATAGACTCAGTGCCACATCTACCCATGATATATTTGTCTTATCGTG
ACTGCTGGAAATACACAGGAACTGATGTCGCACAGAGCGCAGCAGACAGC
TTTGCCGTTGGTTGTATGGGCAACATACTTGCATCTCAGTTTCTTCTATC
AAAGAACAGTAATATCTATCAAGACAATATTAGAGATTTAAACTAAGAAT
TCTCACAAGAGTGAAGAATAAAAATGCGGATGACAGTAGTGATGGTGGTG
GTGGTCATGGCATTGGTTTTTTATTTGAGGGCGGCGGTATAAATGGATTT
TTATCAAGGTGCAGATAAGACATTAGAGCTATGGACATGAGGGTGGTGGT
GTGCAAGCATGTCGTCAAGAGAGACAGAGAGAGAAATGTTAATACTAAGG
GGGGAAAAGGGAGCTGAACTGGCACCGGATGGCTGTGAGATCAGTAAAGA
GGCTTTTGGGCTATAAATTTCCAAGGATGACGAAATATAGAATCCCTCAA
AAACTCAGTAATTATTTAATTTTACTCCTATTACAATATGTAACTACCCA
ATTGAATACACAAATAATAACTTACACATCCTGAACATTATTTCTCTTAA
T
CGAAAACNTNAAAAAGACGGAGCCAGGGGCGCCGGCGCCGAATATAGGTG
AACTATAGAAGGAANNGNGGCATGAGAACCCCCCNNNGNNNGNNNNGNNN
NNNNNNNGNNCNTAAAAACCCCCCCNGGNGANNNNGGNNNGNGNNNNNNN
GNNNNNNNNAGNNNGGNNNNNGGNNNNNNTTTCTAAAAAAAAGCCCCCCG
ANNGNNAGNANNCCNAACCANNCGCGCCCNGGGGNNGGCANNNCCACACC
AGGAGGAAANGNNCNAAGNAACCAGCAGNNCCGCCCGGNCCACAGGGGNC
AAGAAACNNCNCGAGAAANCCNGGNTTATAGAAGCGGAGGGGAACNCGAG
CCCCNAAGGAAGGCACCGCCNNCCCCNCNCAGAGCAAGGAGAATTTTTTT
TTCACCCCCGNGGCACNCAGGCAGCGGGGAGGAAAGAAAAACCACCAGTT
TTTTCGCCCGCCACNAGNCCCNCTCCCAAAAAAAAAAAAAAAGGGTGNCC
TAGAATATGAAGCGGCAGCTTGAAGCCTCAGGGAAGAAGCAACGGNACAT
ACATTACCAGATCCACTCTGATAGGGAGCCTAGGCTCTTAGCCTTGCTAA
CCAAGACACAGGCCCCAGCAAGTCCCACAAGCAAAGGAAATATTTCCTGA
ACAACACCCCCCGAAAAACAATCGCATGAATTCCATGCCAAGAAAGAGCA
GCAGCACCCACAACATCCAGGAATAGGCTGGCTGGCGGGAACGGCCAACG
GAGCCCTAATGGTTTTTATTTGTTGAGCACGCACAAACCACCCAGGCTAA
GGGACCAGCGCCAGGGGCCCAGAAGGATGAGAGGGCACCACCACCGGGTA
AAGGAAGCCGAACCAGCGCCGAGCGCCCGAGAAAGGCGCAAGGAAGAGAT
GGACACCGGCNACGGGAGAAAAGGGCCAAGCCCCGGAACCGGCCAAAAGG
ACGGAAACAGCGCGGAACCCGGAACGAAAAACCAAAAAAAGGAGACGAGG
GGAACAAGCCGCGAAGCAAAAAAGAACATACGCAAACGAGAGAACCACGG
AGAAGAGCTCGCATAACAGAACGACGACTACGGAAACGGACGCAGACAAA
ACCAAAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_d22.b1 MSMg01no134_d22.b1 CHROMAT_FILE:
MSMg01no134_d22.b1 PHD_FILE: MSMg01no134_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:27 2005
         (192 letters)



>mm_chr19_10807327_10807918
          Length = 592

 Score =  333 bits (172), Expect = 5e-96
 Identities = 187/192 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggagatgctgagcacagcctgtagggcccagggctaggagggagttcctgggtatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 392 cagggagatgctgagcacagcctgtagggcccagggctaggagggagttcctgggtacct 333

                                                                       
Query: 61  gtgagaagagacaaaatgaatgaaggtaggtggtggacaaagaaagcctgacagtatcct 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 332 gtgagaagagacaaaatgaatgaaggtaggcggtggacaaagaaagcctgacagtatcct 273

                                                                       
Query: 121 catattagccaagaggcaggatgccattagtcttcctctgccagacactaggactcatta 180
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagacaagccaagaggcaggatgccattagtcttcctctgccagacactaggactcatta 213

                       
Query: 181 agaacatggctt 192
           ||||||||||||
Sbjct: 212 agaacatggctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)