Query= MSMg01no134_e02.b1 MSMg01no134_e02.b1 CHROMAT_FILE:
MSMg01no134_e02.b1 PHD_FILE: MSMg01no134_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:29 2005
(619 letters)
>mm_chr19_17228784_17229800
Length = 1017
Score = 1035 bits (535), Expect = 0.0
Identities = 594/619 (95%), Gaps = 12/619 (1%)
Strand = Plus / Plus
Query: 1 ctatattggcacagctctctttcctgcccctccactgttttgctgtggggcaggctctca 60
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 201 ctatattggcacagctctctttcctgaccctccactgttttgctgtgggacaggctctca 260
Query: 61 tgtatcccaggctgaccttgaacttgaaacgcagctaggatcgtcttgaacttctgatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatcccaggctgaccttgaacttgaaacgcagctaggatcgtcttgaacttctgatcc 320
Query: 121 tcttgcctgcacttcccatgcactggaattataggtatctaccatcatgcaccatttatg 180
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tcttgcctgcactttccatgcactggaattataggtatctaccatcacgcaccatttatg 380
Query: 181 gaaattcttaaaagaattttattattttcaaattcttttttatgttctaatgttgccaaa 240
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gaaattcttaaa-gaattttattattttcaaattcttttttatgttctaatattgccaaa 439
Query: 241 ggcttggtttttttttaaagtttaaactacagaaaaataaagaaatgtctttcttctcta 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggcttg-tttttttttaaagtttaaactacagaaaaataaagaaatgtctttcttctcta 498
Query: 301 tacctaccccatgtagacattcataattgatggtatattttgttctacacacacatacac 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 tacctaccccatgtagacattcataattgagggtatattttgttctacacacac------ 552
Query: 361 actttaaaaaatgggtgtaatgaattttatgtaaatggtagcacccaaagcctgcatctt 420
|||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||
Sbjct: 553 --tttaaaaaatgggtgtaatgaattttatgtaaatagtagcactcaaagcatgcagctt 610
Query: 421 tgttaacttggactcttaagtatgcatatcttaaatattattacataccaatatacttag 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgttaacttggactcttaagtatacatatcttaaatattattacataccaatatacttag 670
Query: 481 aatttttccatagtgaatgtcatattatagttgaccactttcttattgatggtcatttag 540
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 671 aatttttccatagtgaatgccatattatagttgaccactttcttattgatggccatttag 730
Query: 541 attagcttttattttt--aaaaaagtaattatttcatttccaaatgtgtgtgtgtgtgtg 598
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 attagcttttattttttaaaaaaagtaattatttcatttccaaatgtgtgtgtgtgtgtg 790
Query: 599 tgtgtgtgtgtgtgtgtgt 617
|||||||||||||||||||
Sbjct: 791 tgtgtgtgtgtgtgtgtgt 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1017
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1007
Effective search space: 613263
Effective search space used: 613263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_e02.g1 MSMg01no134_e02.g1 CHROMAT_FILE:
MSMg01no134_e02.g1 PHD_FILE: MSMg01no134_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:29 2005
(668 letters)
>mm_chr19_17291553_17292618
Length = 1066
Score = 1139 bits (589), Expect = 0.0
Identities = 648/671 (96%), Gaps = 8/671 (1%)
Strand = Plus / Minus
Query: 1 cactctagttccttggatctcctcctgctgctctatagagatgatatgcctgctaggtgc 60
||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||
Sbjct: 866 cactctagttccttggatctcttcctgctgct-tagagagatgatatgcctggtaggtgc 808
Query: 61 tcaggaaagacagggatgaaaagggaaacttgtaggggatatatatgttctcctaagaat 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 807 tcaggaaagacagggatgaaaagggaaacttgtagggg----atatgttctcctaagaat 752
Query: 121 gggaaataacatcagcagttggcagctccctccctcccacccagctctgcaaggagccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gggaaataacatcagcagttggcagctccctccctcccacccagctctgcaaggagccca 692
Query: 181 cacaggaatagatgcatcaccctgtacaccaacccgaaatccctctcaccaatagggaac 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 691 cacaggaatagatgcatcaccctgtacaccaacccaaaatccctctcaccaatagagaac 632
Query: 241 aaacaaacaaggcaggcagaggagtgggtaagccccaagatatagcagcaacaggccaat 300
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 631 agacaaacaaggcaggcagaggagtgggtaagccccaagatgtagcagcaacaggccaat 572
Query: 301 gaggagcaagctgaactgtgagtgctgtttgtgttcaaggggcattgcttctcaatggga 360
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 571 gaggagaaagctgaactgtgagtgttgtttgtgttcaaggggcattgcttctcaatggga 512
Query: 361 aggaacgccctgtatttgaaagatagattatggtaggatgaggggctgagatatgtttgc 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 511 aggaacgccctgtatttgaaagatagattatggtagaatgaggggctgagatatgtttgc 452
Query: 421 tttgc---aaaaaaaatatctttgcctaaagcaactggtgctgtcatcgtcaaagtttgg 477
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 451 tttgcaaaaaaaaaaatatctttgcttaaagcaactgatgctgtcatcgtcaaagtttgg 392
Query: 478 acaagagtgacctttaggaaaaagctacatgattcagaatgtccccgtacaacattcatc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acaagagtgacctttaggaaaaagctacatgattcagaatgtccccgtacaacattcatc 332
Query: 538 ctgtcctttgttccttttttaaagttgggactcagtgttttgttctccctaaacttcctt 597
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 331 ctgtcctttgttcctttttgaaagttgggactcagtgttttgttctccctaaagttcctt 272
Query: 598 taagctgtaaggtcaacaaggcagctgcaggcactgtgttgattttccaacttctcgttg 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 271 taagctgtaaggtcaacaaggcagctgcaggcaccgtgttgattttccaacttctcgttg 212
Query: 658 gacccagagga 668
|||||||||||
Sbjct: 211 gacccagagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1066
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1056
Effective search space: 694848
Effective search space used: 694848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
