Query= MSMg01no134_g24.b1 MSMg01no134_g24.b1 CHROMAT_FILE:
MSMg01no134_g24.b1 PHD_FILE: MSMg01no134_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:50 2005
(744 letters)
>mm_chr19_27157609_27158752
Length = 1144
Score = 1384 bits (716), Expect = 0.0
Identities = 737/744 (99%)
Strand = Plus / Plus
Query: 1 aaccacttataccagcacacacaaatgtgcattcaccaaacagaatttacctggtggata 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaccacttataccagcacacacaaatgtgcattcaccaaacagaatttaactggtggata 260
Query: 61 tgatcacgaataaaaatcatttttccaattttagaaaataatctgaatgcctaagtttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcacgaataaaaatcatttttccaattttagaaaataatctgaatgcctaagtttta 320
Query: 121 ccaattgtgtataggctttgtaaactttgctgtggtaatcctggggattggacgcagatc 180
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 321 ccaattgtgtataggctttgtaaactttgttgtggtaatcctggtgattggacgcagatc 380
Query: 181 ctagtgcatgcagggtaagtgctccatcacttagatctatgccagctctcttctttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagtgcatgcagggtaagtgctccatcacttagatctatgccagctctcttctttgctt 440
Query: 241 acttttacacactaagcttgttgtaggagggtaattatgacaaaatcacttagattttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttacacactaagcttgttgtaggagggtaattatgacaaaatcacttagattttaa 500
Query: 301 gcttctattatgtaataaccttaacttctcaatgagacaagaatttgggtgtgttcaaag 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgtctattatgtaataaccttaacttctcaatgagacaagaatttgggtgtgttcaaag 560
Query: 361 atataaaaatgtataataatagtgtcttgagaaactagggtgcctgcagaactaatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atataaaaatgtataataatagtgtcttgagaaactagggtgcctgcagaactaatttat 620
Query: 421 atcttgttttggagtagccattcaaaccacaaaatgaaaagatatttggatcgagtgagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcttgttttggagtagccattcaaaccacaaaatgaaaagatatttggatcgagtgagc 680
Query: 481 tctgctaatgggatgcttcctgtcaatcccctaagcacggctctgcggtagtcaataaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgctaatgggatgcttcctgtcaatcccctaagcacggctctgcggtagtcaataaag 740
Query: 541 acacagtgattagtctcttgttaataatggcctgtgtgcctgacccagttggaaccaagg 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 acacagtgattagtctcttgttaataatggcctgtgtgtctgacccagttggaaccaagg 800
Query: 601 acaacggggatatgaaccaaaaacttgtttcaaatccaataaataaataccatgagaaat 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaatggggatatgaaccaaaaacttgtttcaaatccaataaataaataccatgagaaat 860
Query: 661 gggcttgactctcacacaacacactaaaggtatcacagcctcgcatgaaacaaagttggt 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtgcttgactctcacacaacacactaaaggtatcacagcctcgcatgaaacaaagttggt 920
Query: 721 agatagaaagttgctgatcctcac 744
||||||||||||||||||||||||
Sbjct: 921 agatagaaagttgctgatcctcac 944
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1144
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1134
Effective search space: 832356
Effective search space used: 832356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_g24.g1 MSMg01no134_g24.g1 CHROMAT_FILE:
MSMg01no134_g24.g1 PHD_FILE: MSMg01no134_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:50 2005
(693 letters)
>mm_chr19_27234501_27235593
Length = 1093
Score = 1297 bits (671), Expect = 0.0
Identities = 690/699 (98%), Gaps = 6/699 (0%)
Strand = Plus / Minus
Query: 1 gtgtttctctcttacttcttgacatgattgctcagtgtagaagcacacaaatgggatttt 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 778 gtgtttctctcttacttcttgacatgattgttcagtgtagaagcacacaaatgggatttt 719
Query: 61 ttttttctgttaaaaagttacattgtagccgggcgtggtaagtgcacacctttaatccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttttttctgttaaaaagttacattgtagccgggcgtggtaagtgcacacctttaatccca 659
Query: 121 gcactcaggaggcagaggcaggcggatttctgagtttgaggccagcctggtctacaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcactcaggaggcagaggcaggcggatttctgagtttgaggccagcctggtctacaaaat 599
Query: 181 gagttccaggacagccagggctacacagagaaaccctgtctc--aaaaaaaaactaaaaa 238
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 598 gagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaaaaaactaaaaa 539
Query: 239 gaaaacattacattgtggtgagagttcttgtatacagagcagttattggacctggggcca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaaaacattacattgtggtgagagttcttgtatacagagcagttattggacctggggcca 479
Query: 299 caccttgcatatatattaaattatttgattttcattataaccctagcttagtggttctca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caccttgcatatatattaaattatttgattttcattataaccctagcttagtggttctca 419
Query: 359 gccactaagtggttcctgatgccacaaccctttagtacagttcctcacattgtagtgact 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 418 gccactaagtggttcctgatgccacaaccctttagtacagttcctcacgttgtagtgact 359
Query: 419 cccagccataaagttatt----ttttttttgctacttcatgactgtaattttgctactgt 474
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cccagccataaagttattattattttttttgctacttcatgactgtaattttgctactgt 299
Query: 475 tttgggttgtaatgtaaatatctgacaggcaggatgtctgagatgtgattcccaaagaac 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tttgagttgtaatgtaaatatctgacaggcaggatgtctgagatgtgattcccaaagaac 239
Query: 535 tcgggttctacaggttaagaacctgtaccctaggtgccacaatctgaattgttctcatgc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tcgggttctacaggttaagaacctgtaccctaggtgccacaatctgaattgttctcatgc 179
Query: 595 taaaccgattaaacagggcctggagaaggaagctacttcactgggtaaggatgaagtctc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 taaaccgattaaacagggcctggagaaggaagctacttcactgggtaaggatgaagtctc 119
Query: 655 aggcagacaagaggtcagccaccacagtgtgttagctct 693
|||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aggcagacaagaggtcagccaccacagtgtgttagctct 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
