Query= MSMg01no134_m05.b1 MSMg01no134_m05.b1 CHROMAT_FILE:
MSMg01no134_m05.b1 PHD_FILE: MSMg01no134_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:29 2005
(674 letters)
>mm_chr19_35853258_35854331
Length = 1074
Score = 1203 bits (622), Expect = 0.0
Identities = 661/678 (97%), Gaps = 8/678 (1%)
Strand = Plus / Plus
Query: 1 ctgaacaccactgattaatgtgtgagccttcaggtttccactgttctggaaagtctattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaacaccactgattaatgtgtgagccttcaggtttccactgttctggaaagtctattt 260
Query: 61 agtcccagtctatgttgtgactctgatttaataccctcttaatgtggagtttggtctgaa 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcctagtctatgttgtgactctgatttaataccctcttaatgtggagtttggtctgaa 320
Query: 121 ggtgaagatcacaaattgatttccaccaagttttaatactaaaatgtggtttccatcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgaagatcacaaattgatttccaccaagttttaatactaaaatgtggtttccatcatc 380
Query: 181 ctaaatcaatattttattcttgtgcctttaaagctcaaattaggaataaagtgtcataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaaatcaatattttattcttgtgcctttaaagctcaaattaggaataaagtgtcataga 440
Query: 241 aaggaagaaataggaacagattcttttga----ttttagacatacaaagtgagaacatgt 296
||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 441 aaggaagaaataggaacagattcttttgaaggc----agatatacaaagtgagaacatgt 496
Query: 297 aaaacaacagcttcaattacatttttgttttcccaaagaagcaagacaaattgcaaagct 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 aaaacaacagcttcaattacatttttgttttcccaaagaagccagacaaattgcaaagct 556
Query: 357 ctctatccaaaagtgcaattcctgtgccagggtgtcatatatcattccttaacagagcaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctctatccaaaagtgcaattcctgtgccagggtgtcatatatcattccttaacagagcaa 616
Query: 417 tgtacttatacattatgcagttgatatggaagcagaaacaactgattaattcagctagat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtacttatacattatgcagttgatatggaagcagaaacaactgattaattcagctagat 676
Query: 477 tgaagaagcaggatatcataatcaccataatcattatctttaggatcattataatattta 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 677 tgaagaagcaggatatcataatcaccataatcatcatctttaggatcattataatattta 736
Query: 537 ttggatatttacaatcctattatgtaggcactattgtaatttacatgtatagaattttaa 596
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 737 ttggatatttacaatgctattctgtagacactattgtaatttacatgtatagaattttaa 796
Query: 597 tggaaactgaattctaaacaatttatctgaattctgctaacaatacctaaaaataccaga 656
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 797 tggaaactgagttctaaacaatttatctgaattccgctaacaatacctaaaaataccaga 856
Query: 657 ttggtaaacacaaaattt 674
||||||||||||||||||
Sbjct: 857 ttggtaaacacaaaattt 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_m05.g1 MSMg01no134_m05.g1 CHROMAT_FILE:
MSMg01no134_m05.g1 PHD_FILE: MSMg01no134_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:30 2005
(736 letters)
>mm_chr19_36022504_36023639
Length = 1136
Score = 835 bits (432), Expect = 0.0
Identities = 554/638 (86%), Gaps = 70/638 (10%)
Strand = Plus / Minus
Query: 101 ccttaaaagagaaggctagccgggcgtggtggtgcacacctttaatcccagcacttagga 160
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 1136 ccttaagagagaaggctagccgggtgtggtggcgcacacctttaatcccagcacttagga 1077
Query: 161 ggcagaggcagtcaggtttctgagttcgaggccagcctggtctacagagtgagttccagg 220
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ggccgaggcaggcagatttctgagttcgaggccagcctggtctacagagtgagttccagg 1017
Query: 221 acagccagggctacacagagaaaccctttctcaaaaaacaaaacaaaacaaaacaaaaca 280
||||||||||||| ||||||||||||| ||||||| |
Sbjct: 1016 acagccagggctatacagagaaaccctgtctcaaa------------------------a 981
Query: 281 aatttttacaaaacaaaacaaagcaaaacaaaacaacagagagagagagagagagagaga 340
||| |||||||| |||||
Sbjct: 980 aat--------------------------aaaacaac------------------agaga 965
Query: 341 gagagagagagagagagagagagagaaagctagaagttagggacc-tttccgaagc-ttt 398
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 964 gagagagagagagagagagagagagaaagctagaagttagggaccttttccgaagctttt 905
Query: 399 gttaatgatgggtggcttaggaaagctacctcttccctttgagcttcagttgcttcatct 458
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 904 gttaatgatgggtggcttaggaaagctgcctcttccctttgagcttcagttgcttcatct 845
Query: 459 gaaaagaggagatagtgctcacccagcgtctgttaccttcgtacttcctctcctcttcaa 518
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaaaagaggagatggtgctcacccagcgtctgttaccttcgtacttcctctcctcttcaa 785
Query: 519 tcgcattccccctcttccttcccttggaggcaagcatcttccctgaatatttttgtaatt 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 784 tcgcattccccctcttccttcccttggaggcaagcatcttccctgaatatttttgtaact 725
Query: 579 ggcacttaaaagtttttaccataaaatatttgtccactaaaatgtgcatatttgagggtg 638
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 724 ggcacttaaaagtttttaccataaaatatttgtccactaaaatgtgcctattcgagggtg 665
Query: 639 ctgggaattgagcccaggtcctctgaatgaggacccagtgctctttaactgctgaatcat 698
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctgggaattgaacccaggtcctctgaatgaggacccagtgctctttaactgctgaatcat 605
Query: 699 ctcaccaactcaaaagtgcgtttatttttttattgcta 736
||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ctcaccaactcaaaagtgcgtttatttttttattgcta 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space: 817476
Effective search space used: 817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
