Query= MSMg01no135_e13.b1 MSMg01no135_e13.b1 CHROMAT_FILE:
MSMg01no135_e13.b1 PHD_FILE: MSMg01no135_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:22 2005
(270 letters)
>mm_chr19_7305982_7306651
Length = 670
Score = 458 bits (237), Expect = e-133
Identities = 261/273 (95%), Gaps = 7/273 (2%)
Strand = Plus / Plus
Query: 5 gaattcccacgcagcatctttcatgagcctttgacacaatcatcacagtggaagttccca 64
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattcccacgcagcatctttcatgagcctttgacacaatcatcacagtagaagttccca 264
Query: 65 ctggaatcaattgtcatgtctgctgactggcacgatcttaacctcctgcctttggaagag 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggaatcaattgtcatctctgctgactggcacgatcttaacctcctgcctttggaagag 324
Query: 125 ccttccttcacaagtatcacttaagaaccatccaaactcagccctgaacctattagctag 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ccttccttcacaagtatcacttaagaaccatccaaactcagccctgcacctattagctag 384
Query: 185 aaaatacccaaaggccagcctacattcatcattcatctgcacttgtatttttggtctctc 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 aaaatacccaaaggccagcctacattcatcattcatctgcacttttatttttggtctctc 444
Query: 245 tacatacgtgggggg-------ggggggcaggg 270
|||||||||||||| |||||||||||
Sbjct: 445 cacatacgtggggggtggggtgggggggcaggg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_e13.g1 MSMg01no135_e13.g1 CHROMAT_FILE:
MSMg01no135_e13.g1 PHD_FILE: MSMg01no135_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:22 2005
(340 letters)
>mm_chr19_7398105_7398844
Length = 740
Score = 563 bits (291), Expect = e-165
Identities = 300/303 (99%)
Strand = Plus / Minus
Query: 37 tccttgcatatctcataaaatatttttaaacactgagtgcagagtagatatatgaaatca 96
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 740 tccttgcatatctcataaaatatttttaaacactgagtgcagagtagatatatgaattca 681
Query: 97 cctgtccgctattaaggcagataagttaaaggcaacacttttaatcaaatttcagttgtt 156
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctgtccgccattaaggcagataagttaaaggcaacacttttaatcaaatttcagttgtt 621
Query: 157 ttggaaaacaagtttccctaaagagagtaggttgtgtaaacatgtactggatttattgta 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttggaaaacaagtttccctaaagagagtaggttgtgtaaacatgtactggatttattgtt 561
Query: 217 attttgcacaaatgaataatacttgataagaaatgacctgtcttacctgcagaggtggct 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attttgcacaaatgaataatacttgataagaaatgacctgtcttacctgcagaggtggct 501
Query: 277 tgggcctgtggtcccagcataggaagaggcttaggtagggggattgaagcagaggtttgt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgggcctgtggtcccagcataggaagaggcttaggtagggggattgaagcagaggtttgt 441
Query: 337 ttt 339
|||
Sbjct: 440 ttt 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
