Query= MSMg01no135_g24.b1 MSMg01no135_g24.b1 CHROMAT_FILE:
MSMg01no135_g24.b1 PHD_FILE: MSMg01no135_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:34 2005
(628 letters)
>mm_chr19_56276681_56277712
Length = 1032
Score = 1156 bits (598), Expect = 0.0
Identities = 622/632 (98%), Gaps = 4/632 (0%)
Strand = Plus / Plus
Query: 1 attcctctcagcctctgaaagctttgatcacaaactggataataccacactaaaatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctctcagcctctgaaagctttgatcacaaactggataataccacactaaaatattg 260
Query: 61 atctgaaatgattgtacctgttggttagggagtccagattgtggtcccttgggtttctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgaaatgattgtacctgttggttagggagtccagattgtggtcccttgggtttctag 320
Query: 121 atggagctggcacttgatatgcccaaggagactgcattgtgacaacataacattcggatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagctggcacttgatatgcccaaggagactgcattgtgacaacataacattcggatg 380
Query: 181 cttgtccatcctcagcctctgggtgtctgcagcattctaaataaacaaagtccagacagg 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgttcatcctcagcctctgggtgtctgcagcattctaaataaacaaagtccagacagg 440
Query: 241 cgatctgtcattgtgactcagggctgcagggttgcacacttgcaatcacagagccatga- 299
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cgatctgtcagtgtgactcagggctgcagggttgcacactcgcaatcacagagccatgaa 500
Query: 300 ---gcaggtctgcccacccactcctgctctgcccgcccatggaggctgccttgggtaaaa 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagcaggtctgcccacccactcctgctctgcccgcccatggaggctgccttgggtaaaa 560
Query: 357 ccatcaaggtgtggaaattgaacttggtacacacagtctcgacccccacccctactcccc 416
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 561 ccatcaaggtgtggaaattgaacttggtacacacagtctcaacccccacccccactcccc 620
Query: 417 agctctcctagaagttatagatccacagggaccaggtctctaaaggaaggggttgggaaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctctcctagaagttatagatccacagggaccaggtctctaaaggaaggggttgggaaa 680
Query: 477 caggatgataaattatgacagaaacagaaaactggaaagccggacgtgattgtgtcatct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caggatgataaattatgacagaaacagaaaactggaaagccggacgtgattgtgtcatct 740
Query: 537 gtaatcccagcatgaatgctgctgaagcaagaggactggcaccagtccgaggccagcctg 596
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 gtaatcccagcatgaatgctgctgaagcaagaggactggcgccagtccgaggccagcctg 800
Query: 597 ggctacagactgagactgcttccaaaagagaa 628
||||||||||||||||||||||||||||||||
Sbjct: 801 ggctacagactgagactgcttccaaaagagaa 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1032
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1022
Effective search space: 631596
Effective search space used: 631596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_g24.g1 MSMg01no135_g24.g1 CHROMAT_FILE:
MSMg01no135_g24.g1 PHD_FILE: MSMg01no135_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:34 2005
(423 letters)
>mm_chr19_56384182_56385004
Length = 823
Score = 772 bits (399), Expect = 0.0
Identities = 417/423 (98%)
Strand = Plus / Minus
Query: 1 tccctgagttccccagggaggatcccttttctaaggatcctaattaagagtgctgtgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tccctgagttccccagggaggatcccttttctaaggatcctaattaagagtgctgtgttg 564
Query: 61 gatgccacaaagacttcagacacacgcctacccacatccctacagtaagaggcagacacc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 gatgccacaaagacttcagacacacgcctacccacatccatacagtaagaggcagacacc 504
Query: 121 ataggcacacgttagagtagagaaaactttctgcacagaagagcgcctgccactcacctt 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataggcacaagttagagtagagaaaactttctgcacagaagagcgcctgccactcacctt 444
Query: 181 tggagcagtctggtcccgtgtaagggtatttgcaggcacagcggtagtatggatgcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 443 tggagcagtctggtcccgtgtaagggtatttgcaggcacagcggtagtaggggtgcttct 384
Query: 241 gggtaatgaggcaatcaccatggacacatgggttgtccttgcacttgttttgtgctgtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gggtaatgaggcaatcaccatggacacatgggttgtccttgcacttgttttgtgctgtat 324
Query: 301 gagatacacagagaagtggagaatgggggtgggacattacttggggcacatttgacttag 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 323 gagatacacagagaagtggagaatgggggtgggacattacttgggacacatttgacttag 264
Query: 361 agggacacctgcttagcttaattttggaggtgggacaagctgactgtagctgtggctttg 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 263 agggacacctgcttagcttaattttggatgtgggacaagctgactgtagctgtggctttg 204
Query: 421 ttc 423
|||
Sbjct: 203 ttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
