BAC Information

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BAC

Clone NameMSMg01-136E03
Chromosome19 (Build37)
Map Location 19,617,805 - 19,618,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136E03.T7 (MSMg01no136_e03.b1)MSMg01-136E03.TJ (MSMg01no136_e03.g1)
ACCAG342508AG342509
length686685
length of high quality
(start - end)
368 (56 - 423)551 (84 - 634)
definitionCHROMAT_FILE: MSMg01no136_e03.b1 PHD_FILE: MSMg01no136_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:35 2005CHROMAT_FILE: MSMg01no136_e03.g1 PHD_FILE: MSMg01no136_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATTTNNNTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTATAGTATCCCTTAATTCGTTATGTAGGGTTGAGG
CTCTGTAACTTACCCTTTTAATTTTTGTCGTCATTGTTCAAATCTTGTTT
AAGAAGCATGTAGCTGAGGTTTCATGAGCAGCGTCTCTGAAATTTCTAGG
AAACACAATCTTACAACAAACTTCCTGTTCCTATAGATCTTACAGTCTCT
CCTGCTTTATTTCTGTAATGATTCCCAAGCCCTAGGTACAGGACTTGTGG
TATAGATGTATCAATTAGGACTGGGTTCCACAACCTTTTATATTTATCAC
TTACTGCTTTCCATAATGGTCTTCTTCTGATACCTAGTGAGGTTTCATTA
ATGGAGTTCCAGGAGAACTCTACTTAACCGCGGGTATAAAAACATTCAAA
ATACAGTTAAGGATTATGCTGATCCAATAAAGAAGCAGTTGTAGATATTT
TTAGAAGATCTTTGACTTCACTAACCCTGGGTTGTTGGCTAGGTTGTCAA
TAGCAGCATGGCTTCACTCTTGTTGAGCGAATCTTAAATTCAATTACGAG
AACTATTGGTTACCGCTGGCAAATGTATGCCACTATCGCACACTTGGACG
TATCATGCCTGCCCTAATACCATTAAGCATTCGTTG
TATTAATACTCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGTTTAGGTACAA
GTCAGAGATTTGGCCCTTACTTCTTCATTCTGGCAGTCCAGATAAGATTC
TTGTCCATGTGACAGTGTCTAATATGTTCCATAAATAAAAAATGACACCT
GTAAGACTGTGCTAATGACATTCCAGACGTTGTCTAGCAAGCCCTCCAGT
GCTGCTCTGAGCAAGAACTTAAGAAATTCAGATGTCCTCCAGCAATTTTG
ATGAAATTGAGGATTCATTCTCCCTTTCCTTCATTCTTGGCTAAATAGTG
CTAAGAAGAGTCTTTTCCAAGTAGACATCAGTGTTGATGGTTGGCAAGGG
TCTTTATAACATTCTGTGTTAAAGAACCACCCCCAATGAGATGAGAAACA
GGTTAAGAAAGAAGTCAAAGGCTATACATTTGAACCACATAAACATAAGG
GACAATTTCCTTAATTTCAAATTTAAATCTCCTTAAAATTAAGTGTAAAT
TAAAGTTCCTTAATTTTAAATTTATAATTCCAATTGGCACATGTAATTAT
CTATATTATTGAATACAGTGATATAATTCTTGTCAGGAAGTATGTATAGC
ATATTCATTTTATATTTGGTTTGATGATCTTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_e03.g1 MSMg01no136_e03.g1 CHROMAT_FILE:
MSMg01no136_e03.g1 PHD_FILE: MSMg01no136_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:35 2005
         (551 letters)



>mm_chr19_19617605_19618555
          Length = 951

 Score = 1019 bits (527), Expect = 0.0
 Identities = 545/551 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagagtttaggtacaagtcagagatttggcccttacttcttcattctggcagtccagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagagtttaggtacaagtcagagatttggcccttacttcttcattctggcagtccagat 260

                                                                       
Query: 61  aagattcttgtccatgtgacagtgtctaatatgttccataaataaaaaatgacacctgta 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagattcttgtccatgtgacagtgtctaatatgttccataaataaaaaatgacacctgta 320

                                                                       
Query: 121 agactgtgctaatgacattccagacgttgtctagcaagccctccagtgctgctctgagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactgtgctaatgacattccagacgttgtctagcaagccctccagtgctgctctgagca 380

                                                                       
Query: 181 agaacttaagaaattcagatgtcctccagcaattttgatgaaattgaggattcattctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacttaagaaattcagatgtcctccagcaattttgatgaaattgaggattcattctcc 440

                                                                       
Query: 241 ctttccttcattcttggctaaatagtgctaagaagagtcttttccaagtagacatcagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttccttcattcttggctaaatagtgctaagaagagtcttttccaagtagacatcagtg 500

                                                                       
Query: 301 ttgatggttggcaagggtctttataacattctgtgttaaagaaccacccccaatgagatg 360
           |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||
Sbjct: 501 ttgatggttggcaagggtctttataacattctgtgttaaagaaatagccccaatgagatg 560

                                                                       
Query: 361 agaaacaggttaagaaagaagtcaaaggctatacatttgaaccacataaacataagggac 420
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaatagggtaagaaagaagtcaaaggctatacatttgaaccacataaacataagggac 620

                                                                       
Query: 421 aatttccttaatttcaaatttaaatctccttaaaattaagtgtaaattaaagttccttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttccttaatttcaaatttaaatctccttaaaattaagtgtaaattaaagttccttaa 680

                                                                       
Query: 481 ttttaaatttataattccaattggcacatgtaattatctatattattgaatacagtgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttaaatttataattccaattggcacatgtaattatctatattattgaatacagtgata 740

                      
Query: 541 taattcttgtc 551
           |||||||||||
Sbjct: 741 taattcttgtc 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)