BAC Information

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BAC

Clone NameMSMg01-136J24
Chromosome19 (Build37)
Map Location 5,057,598 - 5,057,860
singlet/doubletsinglet
Overlap genenone
Upstream geneBC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1
Downstream geneCd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136J24.T7 (MSMg01no136_j24.b1)MSMg01-136J24.TJ (MSMg01no136_j24.g1)
ACCAG342775AG342776
length709711
length of high quality
(start - end)		557 (53 - 609)263 (385 - 647)
definitionCHROMAT_FILE: MSMg01no136_j24.b1 PHD_FILE: MSMg01no136_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:04 2005CHROMAT_FILE: MSMg01no136_j24.g1 PHD_FILE: MSMg01no136_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATTAATCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGAG
CCGCGGAATTCACAGATCTTCGGCTTTTGATTTCTTTTTTTAAATGTATA
GATCTGGAGCTGGAGAGCTGGCCCAGGTGTTCAGAGCACTTGTTGCTCTT
CCAGAGGAATTGGATGTGGTTCCCAGCACCTATATAGTGGCTCGCCATTT
CTTTTTCTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGC
TGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTAAGAAATCC
GCCTGCCTCTGCCTCCCGAGTGCTGTTATTACAGGTGTGCGCCACCACTG
CCCGGCGTAGCTCACCATTTCTAACTCCAGTTCCAAGGGGGTCTGATGAG
TTTTGATCTCAGTTGGCACTCCAGTCATGTGGTGCACATTCTTTTTGGTT
TTTGTTTGTGTTTTGTTTTGTTTTGTTTTGTTTTCTGAGTCAGGGTCTTA
GCTCTGGGTGGCCTTAAACTCAGAGATCAGCCTGCCTCTGTCTCCTAAAT
GCTGGCATTAAAGGGGTACACCAGTATGTCAGGCTTGTTAGGAAAATTCT
TGTACATGTCTTCTTGTAGACACAAAGGAGGTAAATATGTTGAGAGTGGA
GTGATGGTTCTGAGCGGAGCGTGTGCTTTAAATTAACTGTATGAGAAATA
ATCCGCTTA

CTTATTATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAACCGT
GGGGGTGACACTATAGAAGTTACCAAAAAATTCAGTGTGGATCCTGCCAT
GGCTCAGAGGGGCACCGCTGGCTCCTACATCGAAGCCAAATCAGTGTGAG
CACAAGTTGAGTTCGGTGGCAGACCCACCAGGCAAGGGTGGTGGTAACAT
GCCAGTCTTAGATATCTCCACCTTATTTTATTTTTCCCCTCCCGATGTCT
CCATTTTATAAAGTAGGAACCTGAGGCCTTCTTCAGGTAAGTGCCTTATT
ACGGGACTTAAAACTCCAACATATACTTAGTGATTTGACCATTTATTCAT
ACTCTCAGCAAACAAAGCCAGGCATGGCACCACACATCTGTAATTGCTGT
ACTTGTGAGGCTGAGACAGGAGAATCACAAGTTCAGGGGCATCCTTAGCT
ACATAATTGGAAGCTAGCCTGGGCTACATGGCAAGACCCCCATCTCAAAA
AAGAAGTGTGTGTATTTTGTGGCCTAAAGAGAGACTCAATACCAAGTACT
GTGATCTGGTGGGTAACTAAACCACTGTATCCCAGGGACTCTACCCTTCC
TACATCTCCCATGTGCTAGAAGTCAAGTCTCTGAGCTGTGCTGTGCCTCA
GCCAGTGTCCACTGCTGCTTAACAGGACAGGGGCACTGACCAGCAGCTTG
CAGCTTGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_j24.g1 MSMg01no136_j24.g1 CHROMAT_FILE:
MSMg01no136_j24.g1 PHD_FILE: MSMg01no136_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:04 2005
         (263 letters)



>mm_chr19_5057398_5058060
          Length = 663

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catctgtaattgctgtacttgtgaggctgagacaggagaatcacaagttcaggggcatcc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 catctgtaattgctgtacttgtgaggctgagacaggagaatcagaagttcaggggcatcc 260

                                                                       
Query: 61  ttagctacataattggaagctagcctgggctacatggcaagacccccatctcaaaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagctacataattggaagctagcctgggctacatggcaagacccccatctcaaaaaaga 320

                                                                       
Query: 121 agtgtgtgtattttgtggcctaaagagagactcaataccaagtactgtgatctggtgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtgtgtattttgtggcctaaagagagactcaataccaagtactgtgatctggtgggt 380

                                                                       
Query: 181 aactaaaccactgtatcccagggactctacccttcctacatctcccatgtgctagaagtc 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaaaccactgcatcccagggactctacccttcctacatctcccatgtgctagaagtc 440

                                  
Query: 241 aagtctctgagctgtgctgtgcc 263
           ||| |||||||||||||||||||
Sbjct: 441 aaggctctgagctgtgctgtgcc 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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