Query= MSMg01no138_o05.b1 MSMg01no138_o05.b1 CHROMAT_FILE:
MSMg01no138_o05.b1 PHD_FILE: MSMg01no138_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:04 2005
(450 letters)
>mm_chr19_36632793_36633646
Length = 854
Score = 828 bits (428), Expect = 0.0
Identities = 443/450 (98%), Gaps = 4/450 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaagggaagcctgcccccaaatagaagatgaggaactgtgccaagtaggcagt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagggaagcttgcccccaaatagaagatgaggaactgtgccaagtaggcagt 263
Query: 64 agaagcgtttaagagaaaacacaaggtgtatgcagaggacaagagtgacaagtttgtgtt 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 agaagcgtttaagagaaaacacaaggtgtgtgcagaggacaagagtgacaagtttgtgtt 323
Query: 124 gtgtatgaatgggcttgctggaacctctggaccatgatggagctaccagtcactgaacat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgtatgaatgggcttgctggaacctctggaccatgatggagctaccagtcactgaacat 383
Query: 184 atgttatgcttagctttgcactaactggggtagaaacacagacaaggcttaaccagaatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 atgttatgcttagctttgcactaactggggtagaaacacagacaaggcttagccagaatg 443
Query: 244 tcgcacctccggtgatctggggctaatggataacaagcaaatcagtatgtaaaagccaca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcgcacctccggtgatctggggctaatggataacaagcaaatcagtatgtaaaagccaca 503
Query: 304 gtaattctaatgttcctagttatacaggaccagtt----ctactttaaacagtgggaact 359
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 504 gtaattctaatgttcctagttatacaggaccagttagttctactttaaacagtgggaact 563
Query: 360 taaaattttgaaaacaattaggggaaagggaaaattggctttctgtttaattggcaaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taaaattttgaaaacaattaggggaaagggaaaattggctttctgtttaattggcaaatg 623
Query: 420 ttcaggggggtgtgtagtatgtttttgttg 449
||||||||||||||||||||||||||||||
Sbjct: 624 ttcaggggggtgtgtagtatgtttttgttg 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 854
Length adjustment: 10
Effective length of query: 440
Effective length of database: 844
Effective search space: 371360
Effective search space used: 371360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_o05.g1 MSMg01no138_o05.g1 CHROMAT_FILE:
MSMg01no138_o05.g1 PHD_FILE: MSMg01no138_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:04 2005
(560 letters)
>mm_chr19_36809636_36810598
Length = 963
Score = 986 bits (510), Expect = 0.0
Identities = 549/564 (97%), Gaps = 5/564 (0%)
Strand = Plus / Minus
Query: 1 tccctccccaaatcctgcctgttaacggttgtgagacaaatagactttgagtttttgttg 60
|||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct: 763 tccctccccaaatcctgcctcttaatggttgtgagacaaatagactttgaggttttgttg 704
Query: 61 ctggaagtttgtaatcctctcagaaaaaccctagagctattaaagtgagttcagtataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctggaagtttgtaatcctctcagaaaaaccctagagctattaaagtgagttcagtataca 644
Query: 121 ttctttacaggccactttgtgatgatgaccatatacagggtgctatgcttagcactggtg 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 643 ttctttacaggccactttgtgatgatgaccatatacagggtgctgtgcttagcactggta 584
Query: 181 tgaagagaattcttcaagccagactatatttatgatcaaaatatgttatatacatatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgaagagaattcttcaagccagactatatttatgatcaaaatatgttatatacatatata 524
Query: 241 aactgttaaagaataa----ttaataaagcctcagactccaaaatggcacctactgtatt 296
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 523 aactgttaaagaataaataattaataaagccccagactccaaaatggcacctactgtatt 464
Query: 297 tcatgtttctttgatttataaggctgacattggagaggaaaatcctaattctgtaagtgt 356
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 463 tcatgtttctttgatttataaggctgacattggagaggaaaaacctaattctgtaagtgt 404
Query: 357 ggaattatagtgtggttcaagggaaagaaaggccagaaaaagtcttgatggatggttctt 416
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 403 ggaattatagtgtggttcaagggaaagaaaggccagaaaa-gtcttgatggatggttctt 345
Query: 417 tgtttgatgcaaactattgttattgccttcctactagcaaataggacctgctcaacaaca 476
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 344 tgtttgatgcaaactattgttattgccttcctacttgtaaataggacctgctcaacaaca 285
Query: 477 ggaaacatcatacaagcccaaaccagtagatgctataattccatcagtcaaagataatga 536
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggaaacatcatagaagcccaaaccagtagatgctataattccatcagtcaaagataatga 225
Query: 537 acatcttagtgttttcctttgtag 560
||||||||||||||||||||||||
Sbjct: 224 acatcttagtgttttcctttgtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 963
Length adjustment: 10
Effective length of query: 550
Effective length of database: 953
Effective search space: 524150
Effective search space used: 524150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
