BAC Information

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BAC

Clone NameMSMg01-139J05
Chromosome19 (Build37)
Map Location 53,014,681 - 53,015,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042936, Ins1, LOC100043450
Downstream geneXpnpep1, LOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J05.T7 (MSMg01no139_j05.b1)MSMg01-139J05.TJ (MSMg01no139_j05.g1)
ACCAG344939AG344940
length701702
length of high quality
(start - end)
522 (43 - 564)628 (75 - 702)
definitionCHROMAT_FILE: MSMg01no139_j05.b1 PHD_FILE: MSMg01no139_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:01 2005CHROMAT_FILE: MSMg01no139_j05.g1 PHD_FILE: MSMg01no139_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTAAACGACTCCTATAGGTCGAGAATCCGCGGAA
TTCAGGGGTTTGGAGCCAGATCTTGGATTGCATCCTAGCCTGCTACCTGA
TCAACCTTGTGCCACTGAGGGAATTCTTCTTCTGTCTTTGAGCTTCAGAA
CCTCTGCAACATGCACTTAGCCATGCCCAAGCTGAAGAGAAAGCCTGCGG
AAACTGGTTAAAGAGCTTTTGAGGGTCACGTGCTCCAGGGACGAGGCACA
ATGGATGGGTTTCCCACTGGCTGTGTGGGAAAAGTCAACTATCTGTCGAT
TAGACACTGTCAGTGTAGAAAGAGCACCACAAGGCTATTCCTTGTAGTGT
CGAATGTAAACACAGACCTAGTATGTTGGCAGTGAAGAGTGACTTGCCCC
CATGTGACAGTGCTTATGTATTATGAATTTTGAGTCTGATGAGATCTCTG
TAGTACTCTGTAAGGCTGTACGTAAAAACATAATAAATAGACCAAAGAAA
ATTGACAATGAATTTATAATGGGGAGGCAAGTGCTATTTGAGAGCTAAAT
CTTTAGTTGTTGGAAGAAAGTATATGTGACTGGGGCTGGAAAGACCGCAC
AGTGCCTTAACCTCCCGCCTTGCCTTCCCATTCCCCTTCATTTTTTTTTT
TCCCCCTCCTTCTCCCCCCCCTTCCCGTCCGTTTATTCAAGATTTGAATA
T
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAGCACATATCAAAAAGGAGCATT
CTTCACGATCAAGTTGGCTTCGTTCCAGTTTCAGTGATAGTTCAATATGC
ATAAATCAATAAATGCAATGCATCACACAAATGAACACAAAAAGAAATCA
CGTATTATCTCAATTAGAAAAATTAAAATCCTCCGAGAAATTCTACATCC
TTTCATGATAAAAGTCATGAAAAAGCTAAGGATGGATAGAGCATAGTTCA
AAATCCTAAAGACGATATATAGCATGCCTTTAGCCAATACCATATGAAAT
GGAGAAAAACTCAACACGCACATACATCATCAAAGGTGTCTACTCGTTTC
ACTGCACCACTATGTTGCATATAGTGCTTGAGGTCTTAGCTAGATACATT
TAAGATAAAGAAATAATAGGAATACAAATAGGAGTTATAGTATGCTTATT
TGTAAATGATATGATTCTGTATTATAAGAATCCCTGAAGACTCCACCAAA
AAAACTCATGGAGCTGAAAGTACATTTAACAAAGTGACAGGATACAAGAT
TAATATACAGATAAATCAGTCGCCTAGCCTTCCTATATACCAATGACAAG
CAAACAAAAAGAAATCAAGGGAACAATTCTATCTACAATAACCACCAGAT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j05.b1 MSMg01no139_j05.b1 CHROMAT_FILE:
MSMg01no139_j05.b1 PHD_FILE: MSMg01no139_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:01 2005
         (522 letters)



>mm_chr19_53014476_53015397
          Length = 922

 Score =  938 bits (485), Expect = 0.0
 Identities = 509/517 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaggggtttggagccagatcttggattgcatcctagcctgctacctgatcaacct 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaattcaggggtttggagacagatcttggattgcatcctagcctgctacctgatcaacct 663

                                                                       
Query: 66  tgtgccactgagggaattcttcttctgtctttgagcttcagaacctctgcaacatgcact 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgtgccactgagggaattcttcttctgtctttgagcttcagaacctctgcaacatgcact 603

                                                                       
Query: 126 tagccatgcccaagctgaagagaaagcctgcggaaactggttaaagagcttttgagggtc 185
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 602 tagccatgcccaagatgaagagaaagcctgcggatactggttaaagagcttttgagggtc 543

                                                                       
Query: 186 acgtgctccagggacgaggcacaatggatgggtttcccactggctgtgtgggaaaagtca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acgtgctccagggacgaggcacaatggatgggtttcccactggctgtgtgggaaaagtca 483

                                                                       
Query: 246 actatctgtcgattagacactgtcagtgtagaaagagcaccacaaggctattccttgtag 305
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 482 actatctgtcgattagacactgtcagtgtagatagagcaccacaaggctattccttgtag 423

                                                                       
Query: 306 tgtcgaatgtaaacacagacctagtatgttggcagtgaagagtgacttgcccccatgtga 365
           |||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 422 tgtcgactgtaaacacagacctagtatgttggcagggaacagtgacttgcccccatgtga 363

                                                                       
Query: 366 cagtgcttatgtattatgaattttgagtctgatgagatctctgtagtactctgtaaggct 425
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 362 cagtgcttatgtattatgaattttgagtctgatgagacctctgtagtactctgtaaggct 303

                                                                       
Query: 426 gtacgtaaaaacataataaatagaccaaagaaaattgacaatgaatttataatggggagg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtacgtaaaaacataataaatagaccaaagaaaattgacaatgaatttataatggggagg 243

                                                
Query: 486 caagtgctatttgagagctaaatctttagttgttgga 522
           |||||||||||||||||||||||||||||||||||||
Sbjct: 242 caagtgctatttgagagctaaatctttagttgttgga 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)