BAC Information

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BAC

Clone NameMSMg01-139J20
Chromosome19 (Build37)
Map Location 26,736,929 - 26,737,320
singlet/doubletsinglet
Overlap geneSmarca2
Upstream geneDmrt2, EG667806, 1700048O14Rik, LOC100041846, LOC100041857
Downstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J20.T7 (MSMg01no139_j20.b1)MSMg01-139J20.TJ (MSMg01no139_j20.g1)
ACCAG344969AG344970
length712707
length of high quality
(start - end)
658 (44 - 701)394 (71 - 464)
definitionCHROMAT_FILE: MSMg01no139_j20.b1 PHD_FILE: MSMg01no139_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:04 2005CHROMAT_FILE: MSMg01no139_j20.g1 PHD_FILE: MSMg01no139_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTCACCTAAGGAACACTGAATGGCTGAGAAGCACCTGAGAAAATGTTC
AGCATCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTGAGATTCC
ACCTCATACCAGTCAGAATGGCTAAGATCAAAAACTCAGATGACAGCAGA
TGGTGGCAAGGATGTGGAGAAAAAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAA
AACTGGACATAGTACTACCAGAGCAATACCTCTCCTGGGCATATATCCAG
AAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGAAAAGAACCCAGATGTCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTTCTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATTGAC
CTGGAGGATATCATCCTAAGTGAGGTTACTCAATCACAAAAGAACTCACA
TGATATGTACTCACTGATAAGTGGATATTAACCTAGAGACTTAGAATACC
CAAGATACAAGATACAATTTGCAAAACACATGAAACTCAAAAAGAACGAA
GACCAAAGTGTG
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAAATGGAACCTTCAGTGGCTGGTAGCTGG
CCAGTTTCTTCTCTGAACACAAGGTTTCTGTCATCGTTGGAGCATCTCCC
CATGCTAGCTAGGTGGGGAGCCCATGGGTGTGATTTCATGTATCAGCCTT
CTGGGCCGGTACATACTTCTTCAACTAGATAGCAATACACAAAGTACAAG
TCTTGGGCAGGTCTAAGTGTAGGCGCCTTTATTTCCCTAATCTTTGGTAC
AAACTCTGTTGTTTAGACTTCATCACCCTCTGTCTATAGTCTCTCTGTGT
CTATGTGTCTATGTTTCTATCTGGATCTGTCTGTCTGCCTGCCTGTCTTG
TCTACCTCCCTCCTTCCTTCCCTTCCTCTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGCGCATGCACATGTGAGAGGGTCGTCGCAGAGAGTGTAT
TTCGCTAGGAAATTATAAAATACCTAGAAAAGAACTTTAAAAGGTTATAC
ATTTATGGGACTTCTTCAGCTAGACTCCACACATTCAGAAGTTTCAGTAT
GGTTGCTTTGCCACCACAATATTTATTTTCATACAACACACTAGTATTAT
TATAGTGCCTGCCTCAATATATATGTAAACCTCCCCTGATTCCGTATTAT
CCTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j20.g1 MSMg01no139_j20.g1 CHROMAT_FILE:
MSMg01no139_j20.g1 PHD_FILE: MSMg01no139_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:04 2005
         (394 letters)



>mm_chr19_26736729_26737522
          Length = 794

 Score =  750 bits (388), Expect = 0.0
 Identities = 391/392 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatggaaccttcagtggctggtagctggccagtttcttctctgaacacaaggtttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatggaaccttcagtggctggtagctggccagtttcttctctgaacacaaggtttctg 260

                                                                       
Query: 61  tcatcgttggagcatctccccatgctagctaggtggggagcccatgggtgtgatttcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcgttggagcatctccccatgctagctaggtggggagcccatgggtgtgatttcatg 320

                                                                       
Query: 121 tatcagccttctgggccggtacatacttcttcaactagatagcaatacacaaagtacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcagccttctgggccggtacatacttcttcaactagatagcaatacacaaagtacaag 380

                                                                       
Query: 181 tcttgggcaggtctaagtgtaggcgcctttatttccctaatctttggtacaaactctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgggcaggtctaagtgtaggcgcctttatttccctaatctttggtacaaactctgtt 440

                                                                       
Query: 241 gtttagacttcatcaccctctgtctatagtctctctgtgtctatgtgtctatgtttctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttagacttcatcaccctctgtctatagtctctctgtgtctatgtgtctatgtttctat 500

                                                                       
Query: 301 ctggatctgtctgtctgcctgcctgtcttgtctacctccctccttccttcccttcctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggatctgtctgtctgcctgcctgtcttgtctacctccctccttccttcccttcctctg 560

                                           
Query: 361 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 392
           | ||||||||||||||||||||||||||||||
Sbjct: 561 tctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)