BAC Information

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BAC

Clone NameMSMg01-139O03
Chromosome19 (Build37)
Map Location 48,416,970 - 48,417,250
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneSh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139O03.T7 (MSMg01no139_o03.b1)MSMg01-139O03.TJ (MSMg01no139_o03.g1)
ACCAG345171AG345172
length7091,675
length of high quality
(start - end)
281 (377 - 657)---
definitionCHROMAT_FILE: MSMg01no139_o03.b1 PHD_FILE: MSMg01no139_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:25 2005CHROMAT_FILE: MSMg01no139_o03.g1 PHD_FILE: MSMg01no139_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCATXXXXXXXXXXXXXXXXXXXXXXXXTAAATTCGGAGGCNGCGC
GGAANCACCANCCTTTCGTCACGGGAGCGGANCNAGNNNNANNNNNAACN
NGCGGNNNGNNNCCAGAAGGGCACCCGCNACCACNGAGAGNNNGGGNAGC
AGCGGCCCCCAGAAGCGNGNGNGCNCCCACCCAGGNGAAGGACGGCAGCT
GGNNCCAGAAGNGCNNGNGCTNCCACCCAGGGCNGGGACAGCAGCAANAA
AACTTTTTTTCCACTGTCTCTTGCCTAGCATTGAGAATCTGGCAACAGAC
GATCAGACTCTCTGGTTATGTTTTTTTTTTAGNGAGCACACNAGNTNTCC
ACAACTCTTTTAACAAATCCCTGCAACTTAGAGCTTGCAAACAGCCCACG
TTTATTTCCTTCCAACCCTGGAGGTCACAAGTCAGAAGGGTCTTATAGAC
ATGGCTGAAGTAGAGGCAGGTGAGCCGTGGAACTCCAGTGAAGACATCAA
TCTCTCCATGCCTGCTCTTCCAGAGGCTGGAGGTGCCTTTGGCTAGTAAC
TCTTTTGCTAAGTCTCTCTGAATGCCGGCTTCCTAACTTCTGATCTCCTG
TCTCCGTCTTACCATGACCACGGTGATTATACCACAACCACCTAAACAAC
CCAGAGTATTTGATACCTCACTATTCTTAGCTTGTTCATATCTGCAAAGT
CCCCTTGGC
TTTTTTTTTTTCTTCTTTTTNTNATNNNNNNNNNNNNCNCNNNNNNCCCC
CCGTCNNTNTNNNTNCTCGCCNCCTCTGTTTCCTCCTACTTCTACTTTAT
CTACTTNTNNNNNNTNNCCATNANNNCTATNTTATTCNCCCCNNTNTCTC
TCTCATCCCCGNNTAACTTTNCTTNCTNTNCTGCCCCTCNCTACTCACTN
CATCCTACTCNCCCACATNCTCNTCACCAATCTCATACATATANCTACAC
TGTTCTTATTAAAACTTACTCGTTGCCTNCCTTTATTNTTTCGCTTNTCC
GCGCCACGTTCGTTCATCTCTGTATTTTNCTCGCACGCTGTANCGTTCTC
TCTCGCCTGAACACATGCCATACCGCCAGTCATNGCGCCGCCTCTTNTNC
GTCGTCACCCATTTGAAACATATCGTGCGACCTTACGCTCATCTGTCTGC
CCGCTTCTGTATTCTCTGCGTGCGTAGGCCCTGCTNGCTACCGCACGTGC
CACGTGTGCTNTGTCTGATGTNTGTACCTATGCTCGCNACACATGACGAT
GCTCGCGGTTAGTGGTCACGCNNTAAGATTGACATCAGCGCTAGCGATAG
CGCAGAGAGCACGCTGATGTCGTCCAGATCCTGCGTNCTAACTGTCTGCG
CACATACTGTCGCTGTATCCTGCTCACTCTTGATGTCGCATTGTCAGCAC
CTACGCCATGGCCACTCTGATCGTGTATCACAATAGAGTGATTGTATATC
GCGCACGACTATGACAGCACGACGTGTTCGACTAGCTGCGTGCTGATGTA
TACTATCAGATGTGACGAGTGACTTGTATGTGAACGCAGCANCGCGCAGG
ATCACTATATACTACTGAGCGCTGAATGTNTGAGTTTTTATAGATTNATT
GATCANAGGTGTCTTCGACGCACGTAGCACTCGATGCACGACGTGCACNA
CATTTNTGTTGTGTGCGTCTCAATGTGCATGGTCTGACGCCAGCCGGTCG
TCGGTCGATGTCGTCATCGNGTCTCTATATACGGNGCTCTCAACAACCGT
GTGANTNTTGACACNTGANACTGCGCTCAACTACACGCGTATTGTGACCC
GANTCCCTACGCTGTGACTCTTCGCCATCGGCTCGTGAATTGCGCGTGAT
CATATGACGAGTGCTCNGTGATTACGACAACACACCTGGATAATGTACCA
GCGCTACAATATGAGATGCGAGTGGGACTTCGAGTTCGAGACACAAATGN
TGACAAGATGTACGCTAACGAGAGCGAGGACATGTGGCTACGACCATTGA
GANGACACACATTAAGAGCTGCGCACGCAGACTCTCGTCTCGACTGATAT
CACGATGCGACTCACTATNGATGTGTGCACCAGTCCNGATCTGATGACCT
CGTGCATGTACGCACAACTCTCTGTGTCCTCGCACGCGCTTCCAGAGCAC
ACGCACAACATAATNCATGCTGACGGACACATCGGTGATGTGAATATGCG
ACACACACTACGATATACTATGCGATGTGAGCGAGAGCGCACGCTNAGTA
CTCTCNCACATGNATGTATCCTTGATATCTATCACACTTTTGATCNATGA
GTGCCTNATCACACAGCNAACGAGCAANTNTCGCACGCATGATGAGTGTG
ATGCTGCCGCGTGTACTATACCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_o03.b1 MSMg01no139_o03.b1 CHROMAT_FILE:
MSMg01no139_o03.b1 PHD_FILE: MSMg01no139_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:25 2005
         (281 letters)



>mm_chr19_48416591_48417271
          Length = 681

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagagcttgcaaacagcccacgtttatttccttccaaccctggaggtcacaagtcaga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 660 cttagagcttgcaaacagcccacgtttatttccttccaaccctgaaggtcacaagtcaga 601

                                                                       
Query: 61  agggtcttatagacatggctgaagtagaggcaggtgagccgtggaactccagtgaagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agggtcttatagacatggctgaagtagaggcaggtgagccgtggaactccagtgaagaca 541

                                                                       
Query: 121 tcaatctctccatgcctgctcttcca-gaggctggaggtgcctttggctagtaactcttt 179
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 540 tcaatctctccatgcctgctctt-caggaggctggaggtgcctttggctagtaactcttt 482

                                                                       
Query: 180 tgctaagtctctctgaatgccggcttcctaacttctgatctcctgtctccgtcttaccat 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgctaagtctctctgaatgctggcttcctaacttctgatctcctgtctccgtcttaccat 422

                                                     
Query: 240 gaccacggtgattataccacaaccacctaaacaacccagagt 281
           ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 421 gaccacggtgattataccacatccacctaaacaacccagagt 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)