Query= MSMg01no140_h11.b1 MSMg01no140_h11.b1 CHROMAT_FILE:
MSMg01no140_h11.b1 PHD_FILE: MSMg01no140_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:12 2005
(471 letters)
>mm_chr19_56515895_56516765
Length = 871
Score = 820 bits (424), Expect = 0.0
Identities = 457/468 (97%)
Strand = Plus / Plus
Query: 4 ggaattcacttactctcctaattgagagacagccaatcccgttacctcacatgcctctgt 63
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattcacttactcgggtaattgagagacagtcaatcccgttacctcacatgcctctgt 263
Query: 64 gcggctgtaagaggacttcggttcccttgtcatcagtaagaactgtgtcagggcagcctt 123
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 ggggctgtaagaggacttcggttcccttgtcatcagtaagaactgtggcagggcagcctt 323
Query: 124 ctagagactagaaccatggaggactatgttgattggagccaggctcaggacaagccactg 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 ctagagactagaaccatggaggactatggtgattggagccaggctcaggacaagccactg 383
Query: 184 cctgagatggaaaccaagccagaactgagtcagacaccaaaggcctccccaggcctgtgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgagatggaaaccaagccagaactgagtcagacaccaaaggcctccccaggcctgtgc 443
Query: 244 ccatatccaccagcgccttacaattccaaggtgtctgaaagccagctagtgagggcctag 303
|||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct: 444 ccatatccaccagcgccttataattccaaggtgcctgaaagccaactagtgagggcctag 503
Query: 304 ggaccatgctaccctgtgctacagagcagaggaagggatagcaaagcaggggtagtggtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaccatgctaccctgtgctacagagcagaggaagggatagcaaagcaggggtagtggtg 563
Query: 364 ggggtaaacttggctcaaaatgtgaattaaataaccatgtcctctggcgtgctacaatgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggggtaaacttggctcaaaatgtgaattaaataaccatgtcctctggcgtgctacaatgt 623
Query: 424 attcattcactattcactgatttgtcagatcatccatccacacgggtg 471
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 attcattcactattcactgatttgtcagatcatccatccacacaggtg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_h11.g1 MSMg01no140_h11.g1 CHROMAT_FILE:
MSMg01no140_h11.g1 PHD_FILE: MSMg01no140_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:12 2005
(591 letters)
>mm_chr19_56617561_56618550
Length = 990
Score = 814 bits (421), Expect = 0.0
Identities = 448/457 (98%), Gaps = 5/457 (1%)
Strand = Plus / Minus
Query: 1 cactgctaaagagggcgaagtcttctatcaggagtatgcaaggggacagcaagagtacac 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cactgctaaagaaggcgaagtcttctatcaggagtatgcaaggggacagcaagagtacac 394
Query: 61 tcaagcttctgatactacacagatgtggggtcagggctgcttcttttttcagtgatcatt 120
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 393 tc-agcttctgatactacacagatgtggggtcagggctgcttctgttttcagtgatcatt 335
Query: 121 acaattcactttttatattttacacgtgctgcgtgcgtaat-gaccgcctgagtagcatg 179
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 334 acaattcactttttatattttacacgtgctgcgtgcgt-atcgaccgcctgagtagcatg 276
Query: 180 gtgaggctgagtctcattgcctgagtctcagtggtcagcacacttggctgtttggttcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtgaggctgagtctcattgcctgagtctcagtggtcagcacacttggctgtttggttcat 216
Query: 240 aagcacactttagaacagtgtttctcaactctatttttgtcacttttcttcgggggacac 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aagcatactttagaacagtgtttctcaactctatttttgtcacttttcttcgggggacac 156
Query: 300 ttttgaggcaactccttcttatttccgttctccccccgctaccccaaaacgaaatccaag 359
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 155 ttttgaggcaactccttcttatttccattctccccc-gctaccccaaaacgaaatccaag 97
Query: 360 gactacagataatattgtctgtcttctcttttactttggctctttggagaactgcaaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gactacagataatattgtctgtcttctcttttactttggctctttggagaactgcaaact 37
Query: 420 ttcgcccccacccctgagcatcagtaccacaaaagta 456
|||||||| ||||||||||||||||||||||||||||
Sbjct: 36 ttcgcccc-acccctgagcatcagtaccacaaaagta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 990
Length adjustment: 10
Effective length of query: 581
Effective length of database: 980
Effective search space: 569380
Effective search space used: 569380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
