Query= MSMg01no140_i06.b1 MSMg01no140_i06.b1 CHROMAT_FILE:
MSMg01no140_i06.b1 PHD_FILE: MSMg01no140_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
(584 letters)
>mm_chr19_49790009_49790991
Length = 983
Score = 1075 bits (556), Expect = 0.0
Identities = 574/580 (98%), Gaps = 1/580 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcttctcatatcacatgaaaatacctcttcttaaggacctgttaaaaatgata 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcttctcatataacatgaaaatacctcttcttaaggacctgttaaaaatgata 264
Query: 65 gaaaatagtatacctaggaattaacaaatcagtgtatgtatgaattcataaaaatacatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaatagtatacctaggaattaacaaatcagtgtatgtatgaattcataaaaatacatt 324
Query: 125 aattaatgaattaataaacaaagcaagtagaaaataagcatattgtttagatgttagtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattaatgaattaataaacaaagcaagtagaaaataagcatattgtttagatgttagtgg 384
Query: 185 atgcagaagaaatgtctctgaaaaagtagaatgggaagtacagagaagaaggggcacatg 244
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 385 atgcagaagaaatgtctctgaaaaactagaatgggaagtagagagaagaaggggcacatg 444
Query: 245 gttcccagagaaagtcgtggttttctcttgggaaaagaaaagacttaaagtctcagaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttcccagagaaagtcgtggttttctcttgggaaaagaaaagacttaaagtctcagaagc 504
Query: 305 caagatatgactgtcatgcttgaagaacaagaaggtcagtgaatgaaggacgaaaacaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagatatgactgtcatgcttgaagaacaagaaggtcagtgaatgaaggacgaaaacaca 564
Query: 365 gtctatgagtcctgattccagagcagaaatgttgctttggctttcaaaagccagtcgaaa 424
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 565 ggctatgagtcctgattccagagcagaaatgttgctttggctttcaaaagccagttgaaa 624
Query: 425 gatcttgtcatgtagcctcgatcaatttacttatttttactttcaaatattataatatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gatcttgtcatgtagcctcgatcaatttacttatttttactttcaaatattataatatga 684
Query: 485 aatgaaatttaacctcagtcttcttccagtactcattattatctgtgacataatttttca 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 aatgaaatttaacctcagtcttcttccagtactcat-attatctgtgacataatttttca 743
Query: 545 aacatgtgagtgttgagctatctactcgttttatccattt 584
||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacatgtgagtgttgagctatctactcgttttatccattt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_i06.g1 MSMg01no140_i06.g1 CHROMAT_FILE:
MSMg01no140_i06.g1 PHD_FILE: MSMg01no140_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
(343 letters)
>mm_chr19_49935921_49936663
Length = 743
Score = 561 bits (290), Expect = e-164
Identities = 299/302 (99%)
Strand = Plus / Minus
Query: 41 tagacaaacccctatccaagctttaaaacacacagagggaatatctaaattaagaaaatt 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tagacaaacccctatccaagctttaaaacacacagagggaatatctaaattaagaaaatt 684
Query: 101 aaaaactaaaaggcagggcataccatgaaacacaaaggaaatctagagaatcttaaagac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaaactaaaaggcagggcataccatgaaacacaaaggaaatctagagaatcttaaagac 624
Query: 161 atactttaaaaatgtgtactccaccaaattggaaaatctaaataaatggatacttctctt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atactttaaaaatgtgtactccaccaaattggaaaatctaaataaatggatacttctctt 564
Query: 221 gatagttaccacttaccaaagggatatgataaaatggttactgcaagttgctattcagta 280
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 563 gatagttaccacttaccaaagggatatgataaaatggttactgtaagttgctattcagta 504
Query: 281 ataacccctgatgtaggtaaagccttcctcaccttcagctaggtttcagactctctctaa 340
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 503 ataacccctgatgtaggcaaagccttcctcaccttcagctgggtttcagactctctctaa 444
Query: 341 gg 342
||
Sbjct: 443 gg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
