Query= MSMg01no141_j12.b1 MSMg01no141_j12.b1 CHROMAT_FILE:
MSMg01no141_j12.b1 PHD_FILE: MSMg01no141_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:10 2005
(529 letters)
>mm_chr19_58247370_58248298
Length = 929
Score = 969 bits (501), Expect = 0.0
Identities = 522/529 (98%)
Strand = Plus / Minus
Query: 1 tcattgggagaaaagcccggtacggttaccttcaatgcagtccatgaccagtaggcagca 60
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct: 729 tcattgggagaaaagcccggtacggttagcaacaatgcagtccatgagcagtaggcagca 670
Query: 61 gatactgcacctatcaggagtgcatacagcaatttcgtcctccctttattaactccccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gatactgcacctatcaggagtgcatacagcaatttcgtcctccctttattaactccccta 610
Query: 121 ggtgtctaaatagactggaaggagagcagataaatgagcctttgtgctgcaacaggacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggtgtctaaatagactggaaggagagcagataaatgagcctttgtgctgcaacaggacta 550
Query: 181 tctgctgtggctgagaggaggacacacggtgcatcagcctggaggactttctgcttagtg 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 549 tctgctgtggctgagaggaggacacacggtgcatcaggctggaggactttctgcttagtg 490
Query: 241 tctgctccatgtgcatctacagcttagtagagcaggcctggggagcagccctcctttaca 300
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 489 tctgctccatgtgcatctacagcttagcagatcaggcctggggagcagccctcctttaca 430
Query: 301 gactggcctccacagcgcccttctgtgtgtaatggcctctctggtttcctctccaggttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gactggcctccacagcgcccttctgtgtgtaatggcctctctggtttcctctccaggttg 370
Query: 361 acaattaacgtggctgccatactggattttaggaagtgccattttccttaagtgggctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaattaacgtggctgccatactggattttaggaagtgccattttccttaagtgggctcc 310
Query: 421 atctgtgaactttgctgagccctggcaccctctgcgggaggcggggatagcacacagctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atctgtgaactttgctgagccctggcaccctctgcgggaggcggggatagcacacagctt 250
Query: 481 agccattaacttgcttgtcggtaatttccattctcgtcttgtccgtagg 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agccattaacttgcttgtcggtaatttccattctcgtcttgtccgtagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_j12.g1 MSMg01no141_j12.g1 CHROMAT_FILE:
MSMg01no141_j12.g1 PHD_FILE: MSMg01no141_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:10 2005
(604 letters)
>mm_chr19_58096479_58097482
Length = 1004
Score = 1011 bits (523), Expect = 0.0
Identities = 577/605 (95%), Gaps = 21/605 (3%)
Strand = Plus / Plus
Query: 1 ggacagggagtgttctaagtgtttttgtgccaacatatgtgtatctcacccagggtttct 60
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 220 ggacagggagtgttctaagtgtttttgtgccaacatatgtgtatcttagtcagggtttct 279
Query: 61 attcctgcacaaacatcatgaccaagaagcagttggggagggaagggtttattcagctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attcctgcacaaacatcatgaccaagaagcagttggggagggaagggtttattcagctta 339
Query: 121 cactttccacattgctgttgatcaccaaaggatgcaggactggaactcaagcaggtcagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 cactttccacattgctgttgatcaccaaaggatgcaggactggaactcaagcaggtca-g 398
Query: 181 aaa-caggagctgatgttaatgatggccatggaggggtgttctttactggcttgcttccc 239
||| |||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 399 aaagcaggagctgatg--ca-ga-ggccatggaggggtgttctttactggcttgcttc-- 452
Query: 240 ctggcttgctcagcctgctctcttatagaacccaagactaccagcccaggaatggtccca 299
|||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 453 -------------cctgctctcttatagaactcaagactactagcccaggaatggtccca 499
Query: 300 cccacaaggggcctttcccccttgatcactaattgagaaaatgccttacagttggatctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccacaaggggcctttcccccttgatcactaattgagaaaatgccttacagttggatctc 559
Query: 360 atggaggcatttcctcaacggaagctcctttctctgtgataacttcaacttgtgtcaagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atggaggcatttcctcaacggaagctcctttctctgtgataacttcaacttgtgtcaagt 619
Query: 420 tgacacaaaaccagccagtacaatatgtcgttgaggtttatattttaattccctcgaatg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgacacaaaaccagccagtacaatatgtcgttgaggtttatattttaattccctcgaata 679
Query: 480 tatggaaaaggaagtcagaatagcaaagcaaagactatggtgttcagttataataagcag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatggaaaaggaagtcagaatagcaaagcaaagactatggtgttcagttataataagcag 739
Query: 540 gaaggttaaagggaaaagaataagacaggagttgactgaatgcctattctgtgccacagt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaaggttaaagggaaaagaataagacaggagttgactgaatgcctattctgtgccacagt 799
Query: 600 gtgtg 604
|||||
Sbjct: 800 gtgtg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
